Wall clock time and date at job start Sun Mar 29 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40040 * 120.45410 * 83.29168 * 3 2 1 5 5 C 1.38155 * 118.38010 * 179.97438 * 4 3 2 6 6 C 1.39606 * 119.19766 * 0.02562 * 5 4 3 7 7 C 1.47808 * 119.57291 * 179.97438 * 6 5 4 8 8 O 1.21600 * 120.00252 * 346.14906 * 7 6 5 9 9 N 1.34779 * 119.99769 * 166.13858 * 7 6 5 10 10 C 1.46501 * 119.99935 * 187.80410 * 9 7 6 11 11 C 1.36750 * 120.00033 * 7.81468 * 9 7 6 12 12 H 1.07995 * 119.99712 * 319.25675 * 11 9 7 13 13 C 1.39125 * 119.99984 * 139.26196 * 11 9 7 14 14 N 1.31313 * 119.99901 * 352.61707 * 13 11 9 15 15 Si 1.86799 * 119.99802 * 172.62181 * 13 11 9 16 16 H 1.48500 * 109.47076 * 89.99578 * 15 13 11 17 17 H 1.48500 * 109.47011 * 210.00031 * 15 13 11 18 18 H 1.48505 * 109.47042 * 329.99625 * 15 13 11 19 19 N 1.32894 * 120.85008 * 0.02562 * 6 5 4 20 20 C 1.31295 * 121.77229 * 359.97438 * 19 6 5 21 21 H 4.52969 * 13.94992 * 0.02562 * 4 2 1 22 22 H 1.08002 * 120.80963 * 0.25535 * 4 3 2 23 23 H 1.07992 * 120.39666 * 179.97438 * 5 4 3 24 24 H 1.08998 * 109.47182 * 354.20342 * 10 9 7 25 25 H 1.09007 * 109.47064 * 114.20202 * 10 9 7 26 26 H 1.09000 * 109.47597 * 234.19975 * 10 9 7 27 27 H 0.96997 * 119.99725 * 179.97438 * 14 13 11 28 28 H 1.08008 * 119.64592 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3158 -0.1401 -1.1989 5 6 4.6965 -0.1331 -1.1493 6 6 5.3329 0.0123 0.0847 7 6 6.8096 0.0204 0.1474 8 8 7.4610 -0.3460 -0.8118 9 7 7.4342 0.4340 1.2678 10 6 8.8892 0.6053 1.2746 11 6 6.7099 0.6936 2.3983 12 1 5.7604 1.2030 2.3261 13 6 7.1963 0.3014 3.6414 14 7 8.2752 -0.4429 3.7193 15 14 6.3143 0.8338 5.1997 16 1 5.2888 -0.1786 5.5584 17 1 7.2964 0.9575 6.3067 18 1 5.6566 2.1457 4.9726 19 7 4.6281 0.1426 1.2038 20 6 3.3151 0.1408 1.1981 21 1 -1.0501 0.0005 -0.0002 22 1 2.7966 -0.2468 -2.1399 23 1 5.2763 -0.2396 -2.0541 24 1 9.3006 0.2558 0.3277 25 1 9.1302 1.6599 1.4084 26 1 9.3193 0.0278 2.0929 27 1 8.6145 -0.7160 4.5860 28 1 2.7767 0.2495 2.1280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728863344.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:33 Heat of formation + Delta-G solvation = 59.339478 kcal Electronic energy + Delta-G solvation = -15139.608535 eV Core-core repulsion = 12543.517823 eV Total energy + Delta-G solvation = -2596.090713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.49059 -39.74032 -36.79821 -35.19893 -33.48043 -33.07542 -31.59550 -28.45851 -26.93497 -24.97506 -24.44031 -21.46514 -19.98698 -19.77326 -18.06448 -17.30340 -16.73348 -16.38916 -16.10858 -15.91738 -15.57006 -14.83296 -14.63183 -14.13665 -13.82642 -13.47079 -13.03484 -12.93160 -12.77200 -12.54975 -12.27798 -12.03851 -11.68290 -11.15639 -10.86709 -10.74801 -10.04536 -9.71074 -9.35028 -8.15246 -5.98953 -0.53831 0.32873 1.43492 1.48093 1.60948 1.70223 1.78926 2.32505 2.40329 2.78933 3.04897 3.15999 3.31846 3.58582 3.87505 4.06206 4.16554 4.33931 4.69321 4.78483 4.84409 4.96146 5.08475 5.18379 5.37318 5.59878 5.79455 5.98787 6.54697 6.58406 6.92538 7.18698 7.48527 7.90063 8.80156 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.009621 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.766439 B = 2909.567549 C = 3977.281383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.200 4.200 3 C -0.032 4.032 4 C -0.056 4.056 5 C -0.125 4.125 6 C 0.085 3.915 7 C 0.485 3.515 8 O -0.632 6.632 9 N -0.428 5.428 10 C 0.070 3.930 11 C -0.318 4.318 12 H 0.125 0.875 13 C -0.010 4.010 14 N -0.909 5.909 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.258 1.258 19 N -0.441 5.441 20 C 0.098 3.902 21 H 0.268 0.732 22 H 0.175 0.825 23 H 0.149 0.851 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.270 0.730 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.337 2.379 -3.640 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C -0.035 4.035 4 C -0.081 4.081 5 C -0.146 4.146 6 C -0.051 4.051 7 C 0.275 3.725 8 O -0.522 6.522 9 N -0.143 5.143 10 C -0.073 4.073 11 C -0.446 4.446 12 H 0.142 0.858 13 C -0.210 4.210 14 N -0.549 5.549 15 Si 0.817 3.183 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.182 1.182 19 N -0.151 5.151 20 C -0.063 4.063 21 H 0.284 0.716 22 H 0.192 0.808 23 H 0.167 0.833 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.321 2.241 -3.135 13.867 hybrid contribution -0.181 -0.075 0.059 0.204 sum -13.501 2.166 -3.076 14.016 Atomic orbital electron populations 1.25828 0.96243 0.95746 0.96116 1.19848 0.91694 1.04222 1.04355 1.17319 0.89102 1.02222 0.94837 1.21840 0.92219 0.95143 0.98931 1.22067 0.95485 0.98948 0.98107 1.21238 0.93892 0.99466 0.90520 1.18573 0.87314 0.81903 0.84692 1.90567 1.67009 1.55066 1.39553 1.43661 1.07015 1.53571 1.10007 1.21899 0.81966 1.00719 1.02671 1.20498 1.04988 1.35977 0.83183 0.85801 1.26415 0.96943 0.95033 1.02613 1.69761 1.23848 1.35094 1.26180 0.84925 0.77775 0.79116 0.76491 1.19892 1.20771 1.18228 1.68547 1.07749 1.09772 1.29011 1.23624 0.89424 0.94953 0.98286 0.71614 0.80761 0.83305 0.93055 0.93523 0.88614 0.92050 0.80609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 19.25 74.32 1.43 -0.55 15 2 C -0.20 -4.75 13.28 30.02 0.40 -4.35 15 3 C -0.03 -0.94 5.75 -21.19 -0.12 -1.07 15 4 C -0.06 -1.60 9.89 22.69 0.22 -1.38 15 5 C -0.12 -4.54 9.61 22.58 0.22 -4.32 15 6 C 0.09 3.89 6.62 41.85 0.28 4.17 15 7 C 0.49 26.12 7.56 86.78 0.66 26.77 15 8 O -0.63 -35.78 15.75 -4.03 -0.06 -35.84 15 9 N -0.43 -23.65 2.92 -662.25 -1.93 -25.58 15 10 C 0.07 3.66 10.15 127.77 1.30 4.96 15 11 C -0.32 -17.14 7.84 84.14 0.66 -16.49 15 12 H 0.13 6.49 5.57 -2.91 -0.02 6.47 15 13 C -0.01 -0.52 5.30 84.98 0.45 -0.07 15 14 N -0.91 -50.55 10.87 21.69 0.24 -50.31 15 15 Si 0.99 41.60 29.56 68.60 2.03 43.62 15 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 17 H -0.28 -11.55 7.11 99.48 0.71 -10.85 15 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 19 N -0.44 -19.26 6.31 -183.96 -1.16 -20.42 15 20 C 0.10 3.36 10.91 85.18 0.93 4.29 15 21 H 0.27 1.49 7.80 -4.41 -0.03 1.45 15 22 H 0.18 3.52 8.06 -2.91 -0.02 3.50 15 23 H 0.15 5.17 7.69 -2.91 -0.02 5.14 15 24 H 0.05 2.61 6.92 -2.39 -0.02 2.60 15 25 H 0.05 2.23 8.14 -2.38 -0.02 2.21 15 26 H 0.10 5.27 5.47 -2.39 -0.01 5.26 15 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 28 H 0.18 5.08 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -69.19 258.92 6.71 -62.49 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.18 Total: 14.09 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.42 Total: 11.96 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -2.86 Total: -96.32 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.06 Total: -35.84 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.19 6.71 -62.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863344.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.825 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds