Wall clock time and date at job start Sun Mar 29 2020 22:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00269 * 2 1 4 4 H 1.48503 * 109.46942 * 270.00127 * 3 2 1 5 5 H 1.48499 * 109.46960 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46961 * 150.00382 * 3 2 1 7 7 C 1.37879 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47405 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47332 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99957 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99791 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99702 * 180.02562 * 12 11 10 15 15 F 1.39898 * 110.43903 * 57.45817 * 14 12 11 16 16 C 1.54893 * 110.48463 * 294.77045 * 14 12 11 17 17 C 1.54887 * 102.74533 * 203.38295 * 16 14 12 18 18 C 1.54266 * 104.19888 * 37.94403 * 17 16 14 19 19 C 1.53872 * 106.59640 * 336.38805 * 18 17 16 20 20 H 0.97004 * 119.99644 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47200 * 59.99989 * 9 7 2 22 22 H 1.09002 * 109.47325 * 300.00556 * 9 7 2 23 23 H 1.08997 * 109.47114 * 59.99655 * 10 9 7 24 24 H 1.09000 * 109.46692 * 299.99962 * 10 9 7 25 25 H 1.09001 * 110.75228 * 85.07031 * 16 14 12 26 26 H 1.09000 * 110.75571 * 321.69664 * 16 14 12 27 27 H 1.09001 * 110.48816 * 279.26329 * 17 16 14 28 28 H 1.09004 * 110.48531 * 156.62545 * 17 16 14 29 29 H 1.09003 * 110.03179 * 95.67576 * 18 17 16 30 30 H 1.09003 * 110.02980 * 217.05505 * 18 17 16 31 31 H 1.09002 * 110.03208 * 119.28196 * 19 18 17 32 32 H 1.08996 * 110.03362 * 240.71095 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5190 -4.9196 0.0001 12 6 2.2501 -6.0454 0.0007 13 8 3.4566 -5.9821 0.0002 14 6 1.5658 -7.3880 0.0008 15 9 0.7162 -7.5034 -1.1047 16 6 0.7774 -7.5946 1.3180 17 6 0.6800 -9.1371 1.4196 18 6 2.0450 -9.6373 0.9036 19 6 2.6082 -8.5252 0.0015 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6245 -2.5570 0.8896 23 1 2.8718 -3.6044 0.8894 24 1 2.8717 -3.6044 -0.8905 25 1 -0.2147 -7.1486 1.2483 26 1 1.3274 -7.1856 2.1655 27 1 -0.1265 -9.5108 0.7887 28 1 0.5283 -9.4423 2.4550 29 1 2.7187 -9.8152 1.7419 30 1 1.9138 -10.5544 0.3293 31 1 3.5552 -8.1633 0.4019 32 1 2.7503 -8.9021 -1.0113 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772793016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:59 Heat of formation + Delta-G solvation = -158.501258 kcal Electronic energy + Delta-G solvation = -16061.935687 eV Core-core repulsion = 13129.169810 eV Total energy + Delta-G solvation = -2932.765877 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.88799 -40.13392 -37.44537 -36.10514 -33.37670 -30.51093 -29.10901 -29.07733 -25.18412 -22.87547 -21.06697 -20.82897 -19.86520 -18.05692 -16.78118 -16.51621 -16.04266 -15.68216 -15.21078 -14.80820 -14.54330 -13.82768 -13.50530 -13.09777 -13.09293 -12.38754 -11.98517 -11.82268 -11.57826 -11.40850 -11.28926 -11.10748 -11.06086 -10.79916 -10.68287 -10.66727 -10.16126 -9.71445 -9.63066 -9.31675 -8.45992 -6.11759 -4.16539 2.25236 2.84998 3.27821 3.33866 3.37776 3.98971 4.09581 4.36071 4.44766 4.71497 4.99536 5.10966 5.15000 5.18477 5.24803 5.33570 5.63902 5.65188 5.76610 5.88741 5.99982 6.02356 6.03227 6.05507 6.58075 6.81763 7.51606 7.59543 7.81805 8.01730 8.21278 8.88820 9.47971 10.99723 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.059412 B = 0.004929 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.173863 B = 5679.243384 C = 5856.952195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.072 3.928 11 O -0.344 6.344 12 C 0.446 3.554 13 O -0.500 6.500 14 C 0.127 3.873 15 F -0.181 7.181 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.139 4.139 20 H 0.264 0.736 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 -17.637 2.555 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.000 4.000 11 O -0.260 6.260 12 C 0.286 3.714 13 O -0.389 6.389 14 C 0.108 3.892 15 F -0.161 7.161 16 C -0.176 4.176 17 C -0.162 4.162 18 C -0.160 4.160 19 C -0.176 4.176 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.923 -17.441 2.525 17.727 hybrid contribution 0.502 1.086 -0.190 1.211 sum 2.424 -16.355 2.335 16.698 Atomic orbital electron populations 1.69976 1.06107 1.27029 1.49638 1.24983 0.94919 0.99397 0.94807 0.86461 0.79745 0.82771 0.78272 1.20450 1.21018 1.19716 1.20964 0.93168 0.90062 1.52388 0.92241 1.19182 0.94169 0.88908 0.99017 1.23757 0.96544 0.78590 1.01111 1.86581 1.42149 1.15650 1.81575 1.23646 0.86728 0.87507 0.73484 1.90631 1.15325 1.87904 1.45014 1.21561 0.90313 0.90884 0.86476 1.92929 1.72098 1.96646 1.54425 1.23100 1.01853 0.97875 0.94784 1.22400 0.97714 0.93994 1.02066 1.22150 0.96762 0.97904 0.99205 1.22731 0.98752 0.93508 1.02646 0.92670 0.95228 0.95264 0.92068 0.92095 0.88586 0.89017 0.90691 0.90447 0.90930 0.90983 0.88047 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.64 5.35 -27.89 -0.15 0.50 16 10 C 0.07 1.63 5.40 37.16 0.20 1.83 16 11 O -0.34 -7.15 10.22 -39.26 -0.40 -7.55 16 12 C 0.45 8.09 7.00 36.01 0.25 8.35 16 13 O -0.50 -9.83 15.17 -18.75 -0.28 -10.11 16 14 C 0.13 1.80 1.48 -90.11 -0.13 1.67 16 15 F -0.18 -2.80 16.93 2.25 0.04 -2.76 16 16 C -0.14 -1.59 6.11 -24.74 -0.15 -1.74 16 17 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 18 C -0.12 -1.04 6.80 -25.61 -0.17 -1.22 16 19 C -0.14 -1.58 5.99 -25.61 -0.15 -1.73 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 24 H 0.06 1.37 8.13 -51.93 -0.42 0.94 16 25 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.23 6.85 -51.93 -0.36 0.87 16 32 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -30.81 278.33 -6.17 -36.98 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -4.54 Total: -4.28 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.89 Total: -7.17 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.69 Total: -17.66 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.81 -6.17 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772793016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.518 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds