Wall clock time and date at job start Sun Mar 29 2020 22:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00269 * 2 1 4 4 H 1.48503 * 109.46942 * 270.00127 * 3 2 1 5 5 H 1.48499 * 109.46960 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46961 * 150.00382 * 3 2 1 7 7 C 1.37879 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47405 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47332 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99957 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99791 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99702 * 180.02562 * 12 11 10 15 15 F 1.39898 * 110.43903 * 57.45817 * 14 12 11 16 16 C 1.54893 * 110.48463 * 294.77045 * 14 12 11 17 17 C 1.54887 * 102.74533 * 203.38295 * 16 14 12 18 18 C 1.54266 * 104.19888 * 37.94403 * 17 16 14 19 19 C 1.53872 * 106.59640 * 336.38805 * 18 17 16 20 20 H 0.97004 * 119.99644 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47200 * 59.99989 * 9 7 2 22 22 H 1.09002 * 109.47325 * 300.00556 * 9 7 2 23 23 H 1.08997 * 109.47114 * 59.99655 * 10 9 7 24 24 H 1.09000 * 109.46692 * 299.99962 * 10 9 7 25 25 H 1.09001 * 110.75228 * 85.07031 * 16 14 12 26 26 H 1.09000 * 110.75571 * 321.69664 * 16 14 12 27 27 H 1.09001 * 110.48816 * 279.26329 * 17 16 14 28 28 H 1.09004 * 110.48531 * 156.62545 * 17 16 14 29 29 H 1.09003 * 110.03179 * 95.67576 * 18 17 16 30 30 H 1.09003 * 110.02980 * 217.05505 * 18 17 16 31 31 H 1.09002 * 110.03208 * 119.28196 * 19 18 17 32 32 H 1.08996 * 110.03362 * 240.71095 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5190 -4.9196 0.0001 12 6 2.2501 -6.0454 0.0007 13 8 3.4566 -5.9821 0.0002 14 6 1.5658 -7.3880 0.0008 15 9 0.7162 -7.5034 -1.1047 16 6 0.7774 -7.5946 1.3180 17 6 0.6800 -9.1371 1.4196 18 6 2.0450 -9.6373 0.9036 19 6 2.6082 -8.5252 0.0015 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6245 -2.5570 0.8896 23 1 2.8718 -3.6044 0.8894 24 1 2.8717 -3.6044 -0.8905 25 1 -0.2147 -7.1486 1.2483 26 1 1.3274 -7.1856 2.1655 27 1 -0.1265 -9.5108 0.7887 28 1 0.5283 -9.4423 2.4550 29 1 2.7187 -9.8152 1.7419 30 1 1.9138 -10.5544 0.3293 31 1 3.5552 -8.1633 0.4019 32 1 2.7503 -8.9021 -1.0113 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772793016.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:58 Heat of formation + Delta-G solvation = -175.663905 kcal Electronic energy + Delta-G solvation = -16062.679915 eV Core-core repulsion = 13129.169810 eV Total energy + Delta-G solvation = -2933.510105 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.08435 -41.66147 -38.55855 -37.54600 -35.49942 -32.48609 -30.22317 -29.93764 -27.14767 -24.30689 -22.87009 -21.79213 -21.03595 -19.49840 -18.51769 -17.99528 -17.79948 -16.92197 -16.58167 -16.29804 -15.76696 -15.11377 -15.08090 -14.54366 -14.40991 -14.02836 -13.39897 -13.21922 -13.00330 -12.68184 -12.66810 -12.60886 -12.33665 -12.21533 -12.05746 -11.78404 -11.59133 -11.54876 -11.38860 -11.22954 -10.64020 -8.29205 -6.43241 0.78180 1.36639 1.42389 1.44527 1.54865 2.37745 2.98302 3.05287 3.13947 3.30804 3.58216 4.07946 4.13746 4.15063 4.27166 4.33205 4.33616 4.59404 4.61292 4.76728 4.94032 5.00443 5.10886 5.15638 5.22387 5.37945 5.40171 5.40571 5.68511 6.02062 6.41813 6.70111 7.26896 8.83548 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.059412 B = 0.004929 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.173863 B = 5679.243384 C = 5856.952195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.030 3.970 10 C 0.086 3.914 11 O -0.357 6.357 12 C 0.441 3.559 13 O -0.516 6.516 14 C 0.122 3.878 15 F -0.189 7.189 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.136 4.136 20 H 0.268 0.732 21 H 0.004 0.996 22 H 0.009 0.991 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -18.571 3.133 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.590 4.590 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.014 3.986 11 O -0.273 6.273 12 C 0.283 3.717 13 O -0.405 6.405 14 C 0.103 3.897 15 F -0.170 7.170 16 C -0.179 4.179 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.174 4.174 20 H 0.077 0.923 21 H 0.022 0.978 22 H 0.027 0.973 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.731 -18.403 3.102 18.861 hybrid contribution 0.230 1.327 -0.386 1.401 sum 2.961 -17.076 2.716 17.543 Atomic orbital electron populations 1.70100 1.07894 1.28365 1.50216 1.25984 0.95841 1.03485 0.93933 0.85291 0.78547 0.77587 0.78682 1.19585 1.20294 1.18596 1.21356 0.93736 0.91085 1.52781 0.91547 1.18994 0.94343 0.90626 0.96735 1.23303 0.95234 0.78742 1.01352 1.86573 1.42607 1.15899 1.82222 1.24598 0.86822 0.87941 0.72357 1.90612 1.16113 1.88152 1.45611 1.21955 0.91360 0.88917 0.87480 1.92909 1.72450 1.96472 1.55136 1.23203 1.01046 1.00460 0.93151 1.22424 0.98024 0.91262 1.03725 1.22180 0.96646 0.97229 0.99317 1.22800 0.97522 0.93237 1.03839 0.92269 0.97769 0.97290 0.91433 0.92092 0.89138 0.88688 0.90237 0.88106 0.89350 0.89112 0.88915 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.98 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.65 5.35 29.85 0.16 1.81 16 10 C 0.09 3.99 5.40 71.98 0.39 4.38 16 11 O -0.36 -15.14 10.22 -51.43 -0.53 -15.66 16 12 C 0.44 16.05 7.00 71.24 0.50 16.55 16 13 O -0.52 -20.24 15.17 21.98 0.33 -19.91 16 14 C 0.12 3.37 1.48 -10.46 -0.02 3.36 16 15 F -0.19 -5.77 16.93 44.97 0.76 -5.01 16 16 C -0.14 -3.04 6.11 31.89 0.19 -2.85 16 17 C -0.12 -1.69 6.83 31.67 0.22 -1.47 16 18 C -0.12 -1.60 6.80 31.32 0.21 -1.39 16 19 C -0.14 -2.87 5.99 31.32 0.19 -2.68 16 20 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 21 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 22 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.07 3.00 8.13 -2.39 -0.02 2.98 16 24 H 0.06 2.78 8.13 -2.39 -0.02 2.76 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 2.12 6.85 -2.39 -0.02 2.11 16 32 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -66.41 278.33 6.52 -59.90 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.10 Total: 3.33 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 2.54 Total: -12.76 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.19 Total: -35.57 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.76 Total: -5.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.41 6.52 -59.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772793016.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.767 kcal (2) G-P(sol) polarization free energy of solvation -66.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds