Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39731 * 119.58387 * 164.69885 * 3 2 1 5 5 C 1.37973 * 119.19931 * 179.97438 * 4 3 2 6 6 C 1.40247 * 118.40043 * 359.97438 * 5 4 3 7 7 C 1.47671 * 120.43967 * 180.02562 * 6 5 4 8 8 O 1.21573 * 120.00145 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99579 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72385 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.39659 * 119.11439 * 0.27407 * 6 5 4 20 20 N 1.31483 * 120.71385 * 359.43129 * 19 6 5 21 21 H 4.51264 * 14.17505 * 359.97438 * 4 2 1 22 22 H 1.07996 * 120.40121 * 359.95371 * 4 3 2 23 23 H 1.07998 * 120.80200 * 179.97438 * 5 4 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 25 25 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 26 26 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 27 27 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 28 28 H 1.08002 * 119.63526 * 179.70618 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2953 1.1730 -0.3207 5 6 4.6750 1.1648 -0.3177 6 6 5.3343 -0.0288 0.0101 7 6 6.8097 -0.0881 0.0277 8 8 7.4611 0.9022 -0.2426 9 7 7.4341 -1.2397 0.3445 10 6 8.8977 -1.3002 0.3561 11 6 9.3401 -2.6908 0.7324 12 1 8.6046 -3.4532 0.9424 13 6 10.6840 -2.9894 0.8097 14 7 11.0700 -4.2029 1.1387 15 14 11.9563 -1.6706 0.4472 16 1 12.2974 -0.9536 1.7020 17 1 13.1792 -2.3025 -0.1101 18 1 11.4036 -0.7074 -0.5388 19 6 4.5768 -1.1620 0.3145 20 7 3.2629 -1.1135 0.3065 21 1 -1.0501 -0.0013 -0.0002 22 1 2.7547 2.0746 -0.5682 23 1 5.2338 2.0562 -0.5619 24 1 6.9143 -2.0297 0.5605 25 1 9.2795 -1.0532 -0.6347 26 1 9.2852 -0.5864 1.0831 27 1 12.0154 -4.4131 1.1926 28 1 5.0759 -2.0869 0.5634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787623349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = 53.655098 kcal Electronic energy + Delta-G solvation = -14318.253802 eV Core-core repulsion = 11721.916596 eV Total energy + Delta-G solvation = -2596.337206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56358 -38.64148 -34.54372 -34.10526 -32.64008 -32.46085 -30.92005 -28.03971 -25.05918 -23.71550 -22.15962 -20.44757 -19.51159 -18.08805 -16.82293 -16.44682 -16.02258 -14.96403 -14.93349 -14.83170 -14.13145 -14.05932 -13.42339 -13.05579 -12.67140 -12.40739 -12.31332 -11.44270 -11.14848 -11.06051 -10.81984 -10.07991 -10.06419 -9.91777 -9.55928 -9.37652 -9.01947 -8.82827 -8.28139 -6.25240 -4.28428 0.25403 1.06758 2.37017 2.45764 3.23831 3.30870 3.36420 3.38752 3.64337 3.74258 3.95111 4.29622 4.45112 4.70794 4.82315 4.94464 5.09781 5.11653 5.36199 5.55968 5.88128 5.98221 6.34898 6.71748 6.98556 7.04771 7.15955 7.29769 7.63102 8.01750 8.38616 8.63840 8.76474 9.33599 10.86473 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.057208 B = 0.004946 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.320323 B = 5660.270878 C = 6134.438283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 C 0.234 3.766 4 C -0.153 4.153 5 C -0.019 4.019 6 C -0.167 4.167 7 C 0.546 3.454 8 O -0.549 6.549 9 N -0.694 5.694 10 C 0.219 3.781 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.890 5.890 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 C 0.140 3.860 20 N -0.471 5.471 21 H 0.230 0.770 22 H 0.144 0.856 23 H 0.154 0.846 24 H 0.397 0.603 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.268 0.732 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 8.847 -2.445 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.145 4.145 3 C 0.099 3.901 4 C -0.173 4.173 5 C -0.046 4.046 6 C -0.172 4.172 7 C 0.330 3.670 8 O -0.429 6.429 9 N -0.342 5.342 10 C 0.098 3.902 11 C -0.585 4.585 12 H 0.099 0.901 13 C -0.126 4.126 14 N -0.527 5.527 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.020 4.020 20 N -0.179 5.179 21 H 0.247 0.753 22 H 0.162 0.838 23 H 0.171 0.829 24 H 0.232 0.768 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.674 8.641 -2.385 18.930 hybrid contribution 0.846 0.817 -0.202 1.193 sum -15.827 9.458 -2.587 18.619 Atomic orbital electron populations 1.24923 0.95605 0.98340 0.97173 1.19325 0.91055 1.01743 1.02414 1.16734 0.88123 0.89704 0.95497 1.21993 0.94432 0.98868 1.02000 1.21691 0.93409 0.97929 0.91525 1.21391 0.95702 0.95891 1.04263 1.17974 0.86126 0.84275 0.78597 1.90743 1.66814 1.35202 1.50172 1.46169 1.10055 1.11271 1.66732 1.19589 0.75017 0.98312 0.97329 1.21062 0.93632 0.94443 1.49319 0.90102 1.24794 0.98314 0.95560 0.93909 1.69881 1.16606 1.19290 1.46887 0.86816 0.81128 0.82098 0.79642 1.19802 1.20832 1.18494 1.23073 0.88529 0.97820 0.92586 1.67748 1.09802 1.26960 1.13418 0.75342 0.83788 0.82880 0.76799 0.95292 0.95739 0.92184 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 19.25 29.55 0.57 -0.61 15 2 C -0.14 -1.66 13.43 -38.84 -0.52 -2.18 15 3 C 0.23 3.05 6.59 -84.91 -0.56 2.49 15 4 C -0.15 -1.72 9.77 -39.12 -0.38 -2.10 15 5 C -0.02 -0.25 9.70 -38.92 -0.38 -0.63 15 6 C -0.17 -2.52 5.89 -104.76 -0.62 -3.14 15 7 C 0.55 10.31 7.77 -12.41 -0.10 10.21 15 8 O -0.55 -12.11 16.41 5.30 0.09 -12.02 15 9 N -0.69 -13.73 5.50 -62.48 -0.34 -14.07 15 10 C 0.22 5.25 4.50 -5.19 -0.02 5.23 15 11 C -0.55 -14.68 9.83 -34.44 -0.34 -15.02 15 12 H 0.08 2.25 7.84 -52.49 -0.41 1.84 15 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 14 N -0.89 -26.05 13.96 55.43 0.77 -25.28 15 15 Si 0.88 21.04 27.47 -169.99 -4.67 16.38 15 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 18 H -0.26 -6.19 6.54 56.52 0.37 -5.82 15 19 C 0.14 1.95 10.70 -17.17 -0.18 1.77 15 20 N -0.47 -6.81 10.26 -10.78 -0.11 -6.92 15 21 H 0.23 0.86 7.80 -54.09 -0.42 0.44 15 22 H 0.14 1.17 8.06 -52.49 -0.42 0.75 15 23 H 0.15 1.83 7.73 -52.49 -0.41 1.43 15 24 H 0.40 6.82 6.37 -40.82 -0.26 6.56 15 25 H 0.03 0.73 7.20 -51.92 -0.37 0.36 15 26 H 0.02 0.61 7.57 -51.93 -0.39 0.22 15 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 28 H 0.17 2.05 6.40 -52.49 -0.34 1.72 15 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -32.55 264.55 -5.10 -37.64 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.19 Total: 2.18 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.63 Total: -1.89 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.32 Total: -46.28 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.55 -5.10 -37.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.298 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds