Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39731 * 119.58387 * 164.69885 * 3 2 1 5 5 C 1.37973 * 119.19931 * 179.97438 * 4 3 2 6 6 C 1.40247 * 118.40043 * 359.97438 * 5 4 3 7 7 C 1.47671 * 120.43967 * 180.02562 * 6 5 4 8 8 O 1.21573 * 120.00145 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99579 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72385 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 H 1.08001 * 120.00037 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99572 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00297 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99858 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99924 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99778 * 15 13 11 19 19 C 1.39659 * 119.11439 * 0.27407 * 6 5 4 20 20 N 1.31483 * 120.71385 * 359.43129 * 19 6 5 21 21 H 4.51264 * 14.17505 * 359.97438 * 4 2 1 22 22 H 1.07996 * 120.40121 * 359.95371 * 4 3 2 23 23 H 1.07998 * 120.80200 * 179.97438 * 5 4 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 25 25 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 26 26 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 27 27 H 0.97001 * 119.99511 * 179.97438 * 14 13 11 28 28 H 1.08002 * 119.63526 * 179.70618 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2953 1.1730 -0.3207 5 6 4.6750 1.1648 -0.3177 6 6 5.3343 -0.0288 0.0101 7 6 6.8097 -0.0881 0.0277 8 8 7.4611 0.9022 -0.2426 9 7 7.4341 -1.2397 0.3445 10 6 8.8977 -1.3002 0.3561 11 6 9.3401 -2.6908 0.7324 12 1 8.6046 -3.4532 0.9424 13 6 10.6840 -2.9894 0.8097 14 7 11.0700 -4.2029 1.1387 15 14 11.9563 -1.6706 0.4472 16 1 12.2974 -0.9536 1.7020 17 1 13.1792 -2.3025 -0.1101 18 1 11.4036 -0.7074 -0.5388 19 6 4.5768 -1.1620 0.3145 20 7 3.2629 -1.1135 0.3065 21 1 -1.0501 -0.0013 -0.0002 22 1 2.7547 2.0746 -0.5682 23 1 5.2338 2.0562 -0.5619 24 1 6.9143 -2.0297 0.5605 25 1 9.2795 -1.0532 -0.6347 26 1 9.2852 -0.5864 1.0831 27 1 12.0154 -4.4131 1.1926 28 1 5.0759 -2.0869 0.5634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787623349.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = 30.279527 kcal Electronic energy + Delta-G solvation = -14319.267443 eV Core-core repulsion = 11721.916596 eV Total energy + Delta-G solvation = -2597.350847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.70379 -40.07919 -36.31286 -35.02594 -34.42617 -33.64913 -32.02394 -29.84085 -26.29397 -24.76605 -23.94521 -21.95119 -20.38856 -19.68978 -18.30725 -17.90086 -16.95091 -16.60317 -16.41297 -16.23986 -15.57259 -15.25863 -14.80330 -14.43162 -14.20668 -14.14160 -13.71707 -13.08184 -12.72009 -12.31297 -11.94212 -11.88080 -11.67013 -11.29437 -11.09243 -10.92290 -10.63448 -10.16581 -9.86182 -8.39704 -6.47479 -0.77906 0.08021 1.34099 1.36415 1.42732 1.48655 1.62887 2.17453 2.22932 2.29108 2.88177 2.91002 2.96015 3.50185 3.63768 3.75974 3.95543 4.05005 4.49378 4.63241 4.78293 4.96368 5.00192 5.03165 5.23105 5.36983 5.42354 6.05375 6.45353 6.51658 6.62320 6.70032 7.09204 7.24408 8.74804 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.057208 B = 0.004946 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.320323 B = 5660.270878 C = 6134.438283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.218 4.218 3 C 0.235 3.765 4 C -0.143 4.143 5 C -0.015 4.015 6 C -0.188 4.188 7 C 0.552 3.448 8 O -0.584 6.584 9 N -0.696 5.696 10 C 0.230 3.770 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.930 5.930 15 Si 0.939 3.061 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.258 1.258 19 C 0.143 3.857 20 N -0.496 5.496 21 H 0.275 0.725 22 H 0.179 0.821 23 H 0.162 0.838 24 H 0.408 0.592 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.272 0.728 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 10.363 -2.830 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.218 4.218 3 C 0.100 3.900 4 C -0.162 4.162 5 C -0.041 4.041 6 C -0.193 4.193 7 C 0.339 3.661 8 O -0.466 6.466 9 N -0.345 5.345 10 C 0.107 3.893 11 C -0.587 4.587 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.569 5.569 15 Si 0.762 3.238 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.016 4.016 20 N -0.204 5.204 21 H 0.290 0.710 22 H 0.197 0.803 23 H 0.179 0.821 24 H 0.245 0.755 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.891 10.148 -2.767 21.622 hybrid contribution 1.246 0.327 -0.078 1.290 sum -17.645 10.475 -2.845 20.716 Atomic orbital electron populations 1.26001 0.96256 0.94774 0.93014 1.19564 0.91419 1.05076 1.05766 1.17192 0.89427 0.89628 0.93756 1.22282 0.93559 0.99659 1.00703 1.21867 0.94276 0.97324 0.90646 1.21041 0.93056 0.97574 1.07663 1.18412 0.87653 0.83072 0.76974 1.90712 1.68044 1.36171 1.51651 1.45985 1.08582 1.12488 1.67472 1.19211 0.77528 0.96219 0.96340 1.21272 0.93476 0.95336 1.48625 0.92159 1.25617 1.00490 0.97546 0.93816 1.69988 1.17340 1.21188 1.48337 0.85841 0.78728 0.79479 0.79757 1.18952 1.19908 1.18188 1.23149 0.88646 0.97812 0.92031 1.67801 1.09683 1.28201 1.14740 0.70968 0.80323 0.82080 0.75485 0.96259 0.96363 0.91832 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 19.25 74.32 1.43 0.41 15 2 C -0.22 -4.43 13.43 30.02 0.40 -4.02 15 3 C 0.23 5.76 6.59 40.59 0.27 6.02 15 4 C -0.14 -2.92 9.77 22.57 0.22 -2.70 15 5 C -0.02 -0.37 9.70 22.70 0.22 -0.15 15 6 C -0.19 -5.63 5.89 -19.95 -0.12 -5.74 15 7 C 0.55 20.99 7.77 86.74 0.67 21.67 15 8 O -0.58 -25.86 16.41 -3.95 -0.06 -25.93 15 9 N -0.70 -27.94 5.50 -469.86 -2.58 -30.53 15 10 C 0.23 11.15 4.50 85.63 0.38 11.53 15 11 C -0.55 -30.04 9.83 25.60 0.25 -29.79 15 12 H 0.06 3.46 7.84 -2.91 -0.02 3.44 15 13 C 0.03 1.45 5.47 84.65 0.46 1.91 15 14 N -0.93 -55.26 13.96 21.45 0.30 -54.96 15 15 Si 0.94 43.50 27.47 68.60 1.88 45.38 15 16 H -0.26 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 18 H -0.26 -11.75 6.54 99.48 0.65 -11.09 15 19 C 0.14 3.98 10.70 85.09 0.91 4.89 15 20 N -0.50 -14.02 10.26 -188.03 -1.93 -15.95 15 21 H 0.27 0.41 7.80 -4.41 -0.03 0.37 15 22 H 0.18 2.32 8.06 -2.91 -0.02 2.29 15 23 H 0.16 3.67 7.73 -2.91 -0.02 3.64 15 24 H 0.41 14.35 6.37 -92.71 -0.59 13.76 15 25 H 0.02 0.98 7.20 -2.38 -0.02 0.96 15 26 H 0.02 0.92 7.57 -2.39 -0.02 0.90 15 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 28 H 0.18 4.36 6.40 -2.91 -0.02 4.34 15 Total: -1.00 -70.97 264.55 3.26 -67.71 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.55 Total: 10.25 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.11 Total: 4.03 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -4.22 Total: -101.44 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Total: -70.97 3.26 -67.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623349.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.985 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds