Wall clock time and date at job start Sun Mar 29 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39654 * 120.48315 * 132.66645 * 3 2 1 5 5 N 1.31761 * 120.89519 * 179.97438 * 4 3 2 6 6 C 1.31721 * 122.04693 * 359.97438 * 5 4 3 7 7 C 1.39667 * 120.87091 * 0.02562 * 6 5 4 8 8 C 1.47740 * 120.50269 * 180.02562 * 7 6 5 9 9 O 1.21595 * 119.99870 * 138.94794 * 8 7 6 10 10 N 1.34778 * 120.00095 * 318.95454 * 8 7 6 11 11 C 1.46498 * 119.99772 * 7.75492 * 10 8 7 12 12 C 1.36874 * 120.00039 * 187.75825 * 10 8 7 13 13 H 1.07995 * 119.99735 * 318.04934 * 12 10 8 14 14 C 1.39041 * 120.00224 * 138.05428 * 12 10 8 15 15 N 1.31363 * 120.00126 * 45.09686 * 14 12 10 16 16 Si 1.86797 * 119.99956 * 225.10455 * 14 12 10 17 17 H 1.48496 * 109.47300 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47349 * 119.99920 * 16 14 12 19 19 H 1.48496 * 109.47261 * 239.99692 * 16 14 12 20 20 C 1.39652 * 120.48832 * 312.63937 * 3 2 1 21 21 H 4.52731 * 13.93082 * 359.97438 * 4 2 1 22 22 H 1.07999 * 119.55443 * 359.95717 * 4 3 2 23 23 H 1.08000 * 119.56526 * 179.97438 * 6 5 4 24 24 H 1.08999 * 109.46933 * 98.57675 * 11 10 8 25 25 H 1.08996 * 109.46880 * 218.57554 * 11 10 8 26 26 H 1.08996 * 109.47118 * 338.57623 * 11 10 8 27 27 H 0.96997 * 120.00110 * 180.02562 * 15 14 12 28 28 H 1.07999 * 120.92062 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 0.8166 -0.8850 5 7 4.6316 0.8240 -0.8916 6 6 5.3389 0.0718 -0.0736 7 6 4.7124 -0.7743 0.8441 8 6 5.5137 -1.6140 1.7582 9 8 5.1752 -1.7432 2.9189 10 7 6.6199 -2.2368 1.3055 11 6 7.1237 -1.9492 -0.0397 12 6 7.2725 -3.1381 2.1026 13 1 7.4161 -2.9262 3.1517 14 6 7.7506 -4.3263 1.5615 15 7 8.3953 -4.3143 0.4170 16 14 7.4761 -5.9397 2.4619 17 1 6.7291 -5.6838 3.7196 18 1 6.6933 -6.8610 1.5995 19 1 8.7880 -6.5570 2.7828 20 6 3.3149 -0.8142 0.8853 21 1 -1.0500 -0.0009 0.0002 22 1 2.7744 1.4500 -1.5734 23 1 6.4175 0.1092 -0.1138 24 1 7.9388 -1.2282 0.0241 25 1 7.4878 -2.8697 -0.4958 26 1 6.3195 -1.5356 -0.6482 27 1 8.7285 -5.1433 0.0393 28 1 2.7983 -1.4571 1.5826 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798285419.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:37 Heat of formation + Delta-G solvation = 80.173551 kcal Electronic energy + Delta-G solvation = -15003.021666 eV Core-core repulsion = 12407.834386 eV Total energy + Delta-G solvation = -2595.187279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20443 -38.04704 -34.87527 -34.20803 -32.34614 -31.63175 -30.33683 -26.56228 -25.30175 -23.74701 -23.29890 -20.22545 -18.42290 -17.22377 -16.75010 -16.49914 -15.78387 -14.92931 -14.58642 -14.22844 -13.95025 -13.57403 -12.90630 -12.87617 -12.45434 -11.81584 -11.74345 -11.66785 -11.28911 -10.84169 -10.73222 -10.46469 -10.28933 -9.57894 -9.40043 -8.69574 -8.59693 -8.43089 -7.79844 -6.77989 -3.97052 0.83005 1.30699 2.68533 2.99585 3.09564 3.23945 3.34567 3.77003 3.97978 4.18692 4.26140 4.55100 4.62418 4.85698 5.00866 5.17700 5.39672 5.59962 5.76405 5.96548 6.18067 6.27582 6.38418 6.57106 6.77569 7.07834 7.46524 7.49462 8.05308 8.17692 8.37602 9.00064 9.19091 9.84980 10.25316 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.035673 B = 0.007051 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.709729 B = 3969.977637 C = 4351.981416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.135 4.135 3 C -0.056 4.056 4 C 0.119 3.881 5 N -0.486 5.486 6 C 0.121 3.879 7 C -0.140 4.140 8 C 0.484 3.516 9 O -0.576 6.576 10 N -0.427 5.427 11 C 0.041 3.959 12 C -0.350 4.350 13 H 0.100 0.900 14 C 0.078 3.922 15 N -0.817 5.817 16 Si 0.885 3.115 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.281 1.281 20 C -0.015 4.015 21 H 0.225 0.775 22 H 0.157 0.843 23 H 0.171 0.829 24 H 0.042 0.958 25 H 0.118 0.882 26 H 0.045 0.955 27 H 0.274 0.726 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 5.294 -5.066 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.058 4.058 4 C -0.039 4.039 5 N -0.193 5.193 6 C -0.036 4.036 7 C -0.146 4.146 8 C 0.272 3.728 9 O -0.461 6.461 10 N -0.145 5.145 11 C -0.102 4.102 12 C -0.476 4.476 13 H 0.118 0.882 14 C -0.133 4.133 15 N -0.449 5.449 16 Si 0.709 3.291 17 H -0.184 1.184 18 H -0.202 1.202 19 H -0.207 1.207 20 C -0.042 4.042 21 H 0.241 0.759 22 H 0.174 0.826 23 H 0.188 0.812 24 H 0.060 0.940 25 H 0.135 0.865 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.747 5.635 -5.244 10.921 hybrid contribution -0.623 -1.351 0.759 1.671 sum -8.370 4.283 -4.485 10.417 Atomic orbital electron populations 1.24799 0.95615 0.99753 0.99731 1.19761 0.91586 1.01109 1.01107 1.16819 0.87761 1.01079 1.00124 1.22883 0.89891 0.95468 0.95649 1.67681 1.07414 1.21191 1.23032 1.23513 1.01060 0.89729 0.89320 1.21328 0.94679 0.99562 0.99013 1.17755 0.82100 0.85133 0.87783 1.90633 1.71638 1.66346 1.17493 1.43335 1.20546 1.36725 1.13872 1.22953 0.96944 1.04875 0.85447 1.19128 1.38392 0.96084 0.93949 0.88216 1.25538 0.92858 0.99630 0.95292 1.70043 1.25113 1.28743 1.20987 0.86613 0.78857 0.82215 0.81457 1.18386 1.20172 1.20711 1.21665 0.92601 0.94952 0.94962 0.75866 0.82571 0.81231 0.93956 0.86463 0.93680 0.91475 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 19.25 29.55 0.57 -1.45 15 2 C -0.13 -1.89 13.27 -38.84 -0.52 -2.40 15 3 C -0.06 -0.88 5.73 -106.92 -0.61 -1.49 15 4 C 0.12 1.78 10.91 -17.05 -0.19 1.59 15 5 N -0.49 -8.10 10.33 -12.57 -0.13 -8.22 15 6 C 0.12 2.17 8.54 -17.07 -0.15 2.02 15 7 C -0.14 -2.83 5.30 -104.87 -0.56 -3.39 15 8 C 0.48 11.96 7.29 -12.38 -0.09 11.87 15 9 O -0.58 -16.14 16.85 5.28 0.09 -16.05 15 10 N -0.43 -10.78 2.99 -123.32 -0.37 -11.15 15 11 C 0.04 0.88 8.58 59.85 0.51 1.40 15 12 C -0.35 -9.57 8.74 -15.00 -0.13 -9.70 15 13 H 0.10 2.87 7.93 -52.49 -0.42 2.46 15 14 C 0.08 1.99 5.31 -17.45 -0.09 1.90 15 15 N -0.82 -20.40 10.82 55.50 0.60 -19.80 15 16 Si 0.89 19.82 29.69 -169.99 -5.05 14.77 15 17 H -0.26 -6.06 7.11 56.52 0.40 -5.66 15 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 20 C -0.02 -0.28 9.53 -38.44 -0.37 -0.65 15 21 H 0.22 1.48 7.80 -54.09 -0.42 1.05 15 22 H 0.16 1.81 8.06 -52.49 -0.42 1.39 15 23 H 0.17 2.89 5.75 -52.49 -0.30 2.59 15 24 H 0.04 0.86 7.80 -51.93 -0.40 0.45 15 25 H 0.12 2.75 5.16 -51.93 -0.27 2.48 15 26 H 0.04 0.86 4.60 -51.93 -0.24 0.63 15 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 15 28 H 0.14 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -30.14 257.91 -4.61 -34.76 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.03 Total: 2.13 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.61 Total: -0.31 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.10 Total: -39.17 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.05 Total: 14.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.14 -4.61 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798285419.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.930 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds