Wall clock time and date at job start Sun Mar 29 2020 21:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39654 * 120.48315 * 132.66645 * 3 2 1 5 5 N 1.31761 * 120.89519 * 179.97438 * 4 3 2 6 6 C 1.31721 * 122.04693 * 359.97438 * 5 4 3 7 7 C 1.39667 * 120.87091 * 0.02562 * 6 5 4 8 8 C 1.47740 * 120.50269 * 180.02562 * 7 6 5 9 9 O 1.21595 * 119.99870 * 138.94794 * 8 7 6 10 10 N 1.34778 * 120.00095 * 318.95454 * 8 7 6 11 11 C 1.46498 * 119.99772 * 7.75492 * 10 8 7 12 12 C 1.36874 * 120.00039 * 187.75825 * 10 8 7 13 13 H 1.07995 * 119.99735 * 318.04934 * 12 10 8 14 14 C 1.39041 * 120.00224 * 138.05428 * 12 10 8 15 15 N 1.31363 * 120.00126 * 45.09686 * 14 12 10 16 16 Si 1.86797 * 119.99956 * 225.10455 * 14 12 10 17 17 H 1.48496 * 109.47300 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47349 * 119.99920 * 16 14 12 19 19 H 1.48496 * 109.47261 * 239.99692 * 16 14 12 20 20 C 1.39652 * 120.48832 * 312.63937 * 3 2 1 21 21 H 4.52731 * 13.93082 * 359.97438 * 4 2 1 22 22 H 1.07999 * 119.55443 * 359.95717 * 4 3 2 23 23 H 1.08000 * 119.56526 * 179.97438 * 6 5 4 24 24 H 1.08999 * 109.46933 * 98.57675 * 11 10 8 25 25 H 1.08996 * 109.46880 * 218.57554 * 11 10 8 26 26 H 1.08996 * 109.47118 * 338.57623 * 11 10 8 27 27 H 0.96997 * 120.00110 * 180.02562 * 15 14 12 28 28 H 1.07999 * 120.92062 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 0.8166 -0.8850 5 7 4.6316 0.8240 -0.8916 6 6 5.3389 0.0718 -0.0736 7 6 4.7124 -0.7743 0.8441 8 6 5.5137 -1.6140 1.7582 9 8 5.1752 -1.7432 2.9189 10 7 6.6199 -2.2368 1.3055 11 6 7.1237 -1.9492 -0.0397 12 6 7.2725 -3.1381 2.1026 13 1 7.4161 -2.9262 3.1517 14 6 7.7506 -4.3263 1.5615 15 7 8.3953 -4.3143 0.4170 16 14 7.4761 -5.9397 2.4619 17 1 6.7291 -5.6838 3.7196 18 1 6.6933 -6.8610 1.5995 19 1 8.7880 -6.5570 2.7828 20 6 3.3149 -0.8142 0.8853 21 1 -1.0500 -0.0009 0.0002 22 1 2.7744 1.4500 -1.5734 23 1 6.4175 0.1092 -0.1138 24 1 7.9388 -1.2282 0.0241 25 1 7.4878 -2.8697 -0.4958 26 1 6.3195 -1.5356 -0.6482 27 1 8.7285 -5.1433 0.0393 28 1 2.7983 -1.4571 1.5826 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798285419.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:36 Heat of formation + Delta-G solvation = 60.710135 kcal Electronic energy + Delta-G solvation = -15003.865663 eV Core-core repulsion = 12407.834386 eV Total energy + Delta-G solvation = -2596.031277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67401 -39.80917 -36.81104 -35.36966 -34.17773 -33.13207 -31.59905 -28.37201 -27.05744 -25.11149 -24.85028 -21.80011 -19.81036 -19.07397 -18.20183 -17.96742 -17.18851 -16.76749 -16.30947 -15.86316 -15.52550 -15.04283 -14.58191 -14.33398 -14.09787 -13.71554 -13.43935 -13.19941 -12.71069 -12.53113 -12.25500 -12.13896 -11.76992 -11.12381 -10.80817 -10.61150 -10.33118 -9.81591 -9.70538 -8.72669 -6.01258 -0.45246 -0.09516 1.26428 1.39487 1.51927 1.70953 1.80478 2.13220 2.19850 2.60062 2.85672 2.98950 3.23364 3.40367 3.72709 3.75596 3.86568 4.24887 4.41908 4.55337 4.83034 4.85735 4.93407 5.09463 5.20706 5.47972 5.57629 6.13027 6.44027 6.52206 6.73374 7.02582 7.26594 7.91756 8.31511 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.035673 B = 0.007051 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.709729 B = 3969.977637 C = 4351.981416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.205 4.205 3 C -0.041 4.041 4 C 0.132 3.868 5 N -0.486 5.486 6 C 0.123 3.877 7 C -0.162 4.162 8 C 0.478 3.522 9 O -0.624 6.624 10 N -0.438 5.438 11 C 0.048 3.952 12 C -0.400 4.400 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.823 5.823 16 Si 0.947 3.053 17 H -0.281 1.281 18 H -0.265 1.265 19 H -0.263 1.263 20 C -0.027 4.027 21 H 0.270 0.730 22 H 0.198 0.802 23 H 0.175 0.825 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.286 0.714 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.318 5.701 -6.990 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.206 4.206 3 C -0.043 4.043 4 C -0.026 4.026 5 N -0.193 5.193 6 C -0.034 4.034 7 C -0.168 4.168 8 C 0.268 3.732 9 O -0.513 6.513 10 N -0.155 5.155 11 C -0.094 4.094 12 C -0.525 4.525 13 H 0.085 0.915 14 C -0.157 4.157 15 N -0.454 5.454 16 Si 0.769 3.231 17 H -0.206 1.206 18 H -0.189 1.189 19 H -0.188 1.188 20 C -0.053 4.053 21 H 0.285 0.715 22 H 0.215 0.785 23 H 0.192 0.808 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.801 6.040 -7.213 13.586 hybrid contribution -0.180 -1.375 1.288 1.892 sum -9.981 4.666 -5.925 12.510 Atomic orbital electron populations 1.25861 0.96266 0.95666 0.95710 1.19795 0.91708 1.04548 1.04542 1.16908 0.89250 0.99522 0.98665 1.23575 0.89304 0.94575 0.95111 1.67789 1.08370 1.20703 1.22486 1.23459 1.01406 0.89536 0.88970 1.20949 0.95056 1.00922 0.99864 1.18410 0.82009 0.84991 0.87833 1.90570 1.72770 1.68157 1.19774 1.43487 1.20779 1.36520 1.14732 1.22914 0.98029 1.04440 0.84027 1.18938 1.41682 0.98684 0.93184 0.91539 1.26050 0.91927 1.01278 0.96405 1.70023 1.24096 1.29951 1.21358 0.85703 0.79141 0.78748 0.79537 1.20622 1.18935 1.18809 1.21709 0.92006 0.95820 0.95810 0.71458 0.78509 0.80801 0.93016 0.87936 0.91207 0.90300 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 19.25 74.32 1.43 -0.63 15 2 C -0.21 -5.13 13.27 30.01 0.40 -4.73 15 3 C -0.04 -1.24 5.73 -21.35 -0.12 -1.36 15 4 C 0.13 3.57 10.91 85.05 0.93 4.50 15 5 N -0.49 -15.24 10.33 -193.69 -2.00 -17.25 15 6 C 0.12 4.36 8.54 85.05 0.73 5.09 15 7 C -0.16 -6.72 5.30 -20.03 -0.11 -6.82 15 8 C 0.48 24.82 7.29 86.76 0.63 25.45 15 9 O -0.62 -37.25 16.85 -4.01 -0.07 -37.32 15 10 N -0.44 -23.09 2.99 -662.33 -1.98 -25.07 15 11 C 0.05 2.12 8.58 127.77 1.10 3.21 15 12 C -0.40 -22.95 8.74 84.10 0.74 -22.22 15 13 H 0.07 4.14 7.93 -2.91 -0.02 4.12 15 14 C 0.05 2.85 5.31 84.96 0.45 3.30 15 15 N -0.82 -41.11 10.82 21.68 0.23 -40.88 15 16 Si 0.95 41.39 29.69 68.60 2.04 43.42 15 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 18 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 20 C -0.03 -1.00 9.53 23.01 0.22 -0.78 15 21 H 0.27 1.78 7.80 -4.42 -0.03 1.74 15 22 H 0.20 3.67 8.06 -2.91 -0.02 3.64 15 23 H 0.18 5.91 5.75 -2.91 -0.02 5.90 15 24 H 0.05 2.13 7.80 -2.39 -0.02 2.11 15 25 H 0.10 4.85 5.16 -2.39 -0.01 4.84 15 26 H 0.07 2.68 4.60 -2.39 -0.01 2.67 15 27 H 0.29 12.94 8.31 -92.71 -0.77 12.17 15 28 H 0.13 5.03 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -68.47 257.91 5.80 -62.67 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.19 Total: 9.40 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 6.39 Total: 5.02 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.75 Total: -83.19 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.07 Total: -37.32 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.04 Total: 43.42 kcal Total: -68.47 5.80 -62.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798285419.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.384 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds