Wall clock time and date at job start Sun Mar 29 2020 21:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38104 * 119.92641 * 2 1 4 4 C 1.38033 * 120.31598 * 180.26381 * 3 2 1 5 5 C 1.39777 * 120.14871 * 359.48418 * 4 3 2 6 6 C 1.47738 * 120.07566 * 180.23532 * 5 4 3 7 7 O 1.21588 * 120.00048 * 180.02562 * 6 5 4 8 8 N 1.34784 * 120.00058 * 0.02562 * 6 5 4 9 9 C 1.36872 * 119.99798 * 179.97438 * 8 6 5 10 10 H 1.08005 * 120.00262 * 0.02562 * 9 8 6 11 11 C 1.39044 * 119.99886 * 179.97438 * 9 8 6 12 12 N 1.31374 * 120.00065 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00134 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47106 * 89.99733 * 13 11 9 15 15 H 1.48500 * 109.47223 * 209.99865 * 13 11 9 16 16 H 1.48503 * 109.46921 * 329.99977 * 13 11 9 17 17 C 1.39358 * 119.84220 * 0.25926 * 5 4 3 18 18 C 1.39371 * 119.69884 * 359.97438 * 17 5 4 19 19 C 1.43205 * 120.07979 * 180.02562 * 18 17 5 20 20 N 3.48479 * 80.30434 * 179.73444 * 2 1 3 21 21 H 1.09004 * 109.46451 * 270.25368 * 1 2 3 22 22 H 1.08993 * 109.47131 * 30.24932 * 1 2 3 23 23 H 1.08995 * 109.47206 * 150.25602 * 1 2 3 24 24 H 1.08005 * 119.84009 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.92924 * 179.77002 * 4 3 2 26 26 H 0.96996 * 120.00184 * 0.02562 * 8 6 5 27 27 H 0.97000 * 119.99565 * 180.02562 * 12 11 9 28 28 H 1.08011 * 120.15093 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1969 0.0000 4 6 3.5763 1.2063 -0.0055 5 6 4.2866 0.0024 -0.0002 6 6 5.7639 0.0144 -0.0008 7 8 6.3804 -1.0336 0.0033 8 7 6.4284 1.1871 -0.0060 9 6 7.7970 1.1981 -0.0060 10 1 8.3446 0.2672 -0.0024 11 6 8.4825 2.4078 -0.0119 12 7 9.7962 2.4184 -0.0125 13 14 7.5355 4.0180 -0.0190 14 1 7.2851 4.4511 1.3792 15 1 8.3294 5.0561 -0.7241 16 1 6.2391 3.8267 -0.7177 17 6 3.5978 -1.2090 0.0052 18 6 2.2041 -1.2110 0.0058 19 6 1.4881 -2.4512 0.0118 20 7 0.9202 -3.4350 0.0159 21 1 -0.3632 0.0046 1.0277 22 1 -0.3633 0.8877 -0.5177 23 1 -0.3633 -0.8922 -0.5098 24 1 1.6522 2.1300 0.0004 25 1 4.1088 2.1459 -0.0092 26 1 5.9366 2.0231 -0.0089 27 1 10.2743 3.2624 -0.0162 28 1 4.1417 -2.1422 0.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799597727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:47 Heat of formation + Delta-G solvation = 14.689938 kcal Electronic energy + Delta-G solvation = -14621.974294 eV Core-core repulsion = 12023.947432 eV Total energy + Delta-G solvation = -2598.026862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87550 -38.06088 -36.29370 -34.26740 -32.87117 -31.92515 -31.17641 -27.74922 -25.14604 -23.53169 -22.08479 -20.32415 -19.09691 -17.75860 -16.18588 -15.78037 -15.07581 -14.95908 -14.50929 -14.10404 -13.70132 -13.51475 -13.25979 -13.19274 -12.84406 -12.72685 -12.47943 -12.30235 -11.78678 -11.58158 -11.32899 -11.16109 -10.74254 -10.15103 -9.78781 -8.98278 -8.77161 -8.66130 -8.38238 -6.54214 -3.97716 0.69634 1.16303 2.65388 2.77534 2.90102 2.96501 3.03193 3.58415 3.84901 3.91783 4.23115 4.39533 4.67558 4.74105 5.07365 5.13126 5.26413 5.38798 5.42000 5.53949 5.65207 5.81888 5.98743 6.28365 6.33264 6.43358 6.77235 7.34968 7.47164 7.95033 8.38010 8.73664 9.19492 9.64194 10.57203 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.041189 B = 0.006480 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.634537 B = 4320.002723 C = 4984.492464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.041 4.041 3 C -0.122 4.122 4 C -0.077 4.077 5 C -0.100 4.100 6 C 0.472 3.528 7 O -0.577 6.577 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.125 0.875 11 C 0.044 3.956 12 N -0.862 5.862 13 Si 0.879 3.121 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.266 1.266 17 C -0.022 4.022 18 C -0.042 4.042 19 C 0.266 3.734 20 N -0.428 5.428 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.372 0.628 27 H 0.278 0.722 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.789 3.541 0.050 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.044 4.044 3 C -0.140 4.140 4 C -0.097 4.097 5 C -0.104 4.104 6 C 0.261 3.739 7 O -0.462 6.462 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.143 0.857 11 C -0.162 4.162 12 N -0.500 5.500 13 Si 0.704 3.296 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.192 1.192 17 C -0.044 4.044 18 C -0.045 4.045 19 C -0.048 4.048 20 N -0.104 5.104 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.152 0.848 25 H 0.147 0.853 26 H 0.206 0.794 27 H 0.089 0.911 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.982 1.458 0.057 16.048 hybrid contribution -0.213 1.820 -0.027 1.832 sum -16.194 3.278 0.030 16.523 Atomic orbital electron populations 1.20886 0.90699 1.03190 1.02901 1.19914 0.95930 0.91519 0.97066 1.20818 0.93758 0.97224 1.02218 1.21587 0.94274 0.97823 0.95984 1.20219 0.95093 0.92959 1.02094 1.17458 0.85537 0.84627 0.86316 1.90661 1.68376 1.31140 1.56036 1.42198 1.07697 1.06351 1.63943 1.19571 0.79216 0.96962 1.47055 0.85710 1.25149 0.95624 0.98318 0.97116 1.69601 1.06085 1.27910 1.46411 0.86675 0.80024 0.83580 0.79313 1.19101 1.19677 1.19171 1.21236 0.90992 0.99145 0.92993 1.15789 0.91960 0.86531 1.10223 1.25613 0.93095 0.92746 0.93387 1.81214 1.09110 1.10662 1.09396 0.90481 0.90589 0.91673 0.84817 0.85346 0.79365 0.91084 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.60 36.01 0.35 -0.66 15 2 C -0.04 -0.45 5.92 -104.11 -0.62 -1.07 15 3 C -0.12 -1.31 9.67 -39.71 -0.38 -1.69 15 4 C -0.08 -1.03 9.54 -39.08 -0.37 -1.41 15 5 C -0.10 -1.70 5.87 -105.02 -0.62 -2.31 15 6 C 0.47 10.56 7.72 -12.37 -0.10 10.47 15 7 O -0.58 -15.26 15.91 5.29 0.08 -15.17 15 8 N -0.57 -12.88 5.03 -11.87 -0.06 -12.94 15 9 C -0.30 -8.05 10.16 -15.00 -0.15 -8.20 15 10 H 0.13 3.84 7.38 -52.48 -0.39 3.46 15 11 C 0.04 1.12 5.50 -17.45 -0.10 1.03 15 12 N -0.86 -23.76 13.95 55.50 0.77 -22.99 15 13 Si 0.88 17.88 27.74 -169.99 -4.71 13.16 15 14 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 16 H -0.27 -4.82 6.52 56.52 0.37 -4.46 15 17 C -0.02 -0.34 9.30 -38.74 -0.36 -0.70 15 18 C -0.04 -0.55 5.73 -106.99 -0.61 -1.16 15 19 C 0.27 3.70 13.77 -22.47 -0.31 3.39 15 20 N -0.43 -6.59 18.54 41.84 0.78 -5.81 15 21 H 0.08 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.08 0.49 8.08 -51.93 -0.42 0.07 15 23 H 0.06 0.59 7.07 -51.93 -0.37 0.22 15 24 H 0.13 1.01 8.06 -52.48 -0.42 0.59 15 25 H 0.13 1.59 6.39 -52.49 -0.34 1.26 15 26 H 0.37 7.27 3.78 -40.82 -0.15 7.11 15 27 H 0.28 7.02 8.31 -40.82 -0.34 6.69 15 28 H 0.14 2.35 7.65 -52.48 -0.40 1.94 15 LS Contribution 259.54 15.07 3.91 3.91 Total: -1.00 -30.56 259.54 -4.58 -35.14 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -2.08 Total: 7.01 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.27 Total: -2.31 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.49 Total: -41.74 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.71 Total: 13.16 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.56 -4.58 -35.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799597727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.827 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds