Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 178.16441 * 3 2 1 5 5 O 1.21623 * 119.99856 * 138.11804 * 4 3 2 6 6 N 1.34780 * 120.00468 * 318.12448 * 4 3 2 7 7 C 1.39367 * 120.00311 * 185.08204 * 6 4 3 8 8 C 1.38629 * 119.58069 * 185.36220 * 7 6 4 9 9 C 1.40795 * 118.79026 * 179.74801 * 8 7 6 10 10 C 1.41550 * 120.99540 * 180.22783 * 9 8 7 11 11 H 1.07998 * 119.99600 * 153.75719 * 10 9 8 12 12 C 1.40031 * 119.99933 * 333.75663 * 10 9 8 13 13 N 1.30742 * 119.99992 * 350.16231 * 12 10 9 14 14 Si 1.86801 * 119.99832 * 170.15678 * 12 10 9 15 15 H 1.48501 * 109.47011 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46639 * 120.00018 * 14 12 10 17 17 H 1.48495 * 109.46982 * 240.00172 * 14 12 10 18 18 C 1.41187 * 118.01247 * 0.24996 * 9 8 7 19 19 C 1.37581 * 119.01802 * 0.02562 * 18 9 8 20 20 N 1.32086 * 121.11525 * 0.02562 * 19 18 9 21 21 H 1.08998 * 109.47081 * 43.71261 * 1 2 3 22 22 H 1.08997 * 109.47339 * 163.71410 * 1 2 3 23 23 H 1.09001 * 109.46902 * 283.71673 * 1 2 3 24 24 H 0.97004 * 119.99498 * 5.07222 * 6 4 3 25 25 H 1.08001 * 120.60534 * 0.02562 * 8 7 6 26 26 H 0.97000 * 120.00369 * 180.02562 * 13 12 10 27 27 H 1.07994 * 120.48985 * 179.97438 * 18 9 8 28 28 H 1.08002 * 119.44391 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0018 0.0000 5 8 4.6853 0.7866 -0.7032 6 7 4.7527 -0.8667 0.7791 7 6 6.1422 -0.7958 0.8602 8 6 6.8361 -1.7606 1.5740 9 6 8.2400 -1.6759 1.6407 10 6 8.9953 -2.6384 2.3525 11 1 10.0204 -2.8337 2.0743 12 6 8.4134 -3.3372 3.4174 13 7 7.2461 -2.9716 3.8790 14 14 9.3049 -4.7918 4.1781 15 1 10.5989 -4.9995 3.4799 16 1 9.5568 -4.5208 5.6163 17 1 8.4678 -6.0109 4.0432 18 6 8.8718 -0.6020 0.9766 19 6 8.0980 0.3108 0.2976 20 7 6.7827 0.1965 0.2599 21 1 -0.3633 0.7428 -0.7101 22 1 -0.3634 -0.9864 -0.2882 23 1 -0.3633 0.2437 0.9984 24 1 4.2712 -1.5410 1.2834 25 1 6.3098 -2.5650 2.0663 26 1 6.8431 -3.4554 4.6169 27 1 9.9464 -0.4982 1.0020 28 1 8.5742 1.1347 -0.2131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801169990.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 50.545036 kcal Electronic energy + Delta-G solvation = -14550.022152 eV Core-core repulsion = 11953.550084 eV Total energy + Delta-G solvation = -2596.472068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58579 -37.77463 -34.37443 -34.14765 -33.72194 -30.58078 -29.43258 -28.14213 -26.03131 -23.32342 -21.97101 -20.53219 -18.40499 -17.71500 -15.87424 -15.50486 -15.10058 -14.75348 -14.22682 -14.06796 -13.91303 -13.68207 -13.63205 -12.87844 -12.63688 -12.39021 -11.47106 -11.21142 -10.94927 -10.52995 -10.27377 -10.21780 -10.08917 -9.80313 -9.68260 -9.43629 -8.03030 -7.80845 -7.09154 -6.78051 -4.65713 1.76979 2.45198 2.73445 2.79959 3.00788 3.06188 3.22267 3.46356 3.83691 3.96576 4.49360 4.67506 5.32037 5.33501 5.41264 5.60172 5.64539 5.98844 6.52905 6.60205 6.76678 6.91860 7.09662 7.32450 7.36281 7.42191 7.72928 7.90248 8.14886 8.37591 8.65212 8.72385 8.78814 9.62802 10.07067 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.006299 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.587947 B = 4443.881287 C = 5281.925827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.108 4.108 3 C -0.212 4.212 4 C 0.614 3.386 5 O -0.466 6.466 6 N -0.645 5.645 7 C 0.334 3.666 8 C -0.234 4.234 9 C 0.141 3.859 10 C -0.452 4.452 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.795 5.795 14 Si 0.915 3.085 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.272 1.272 18 C -0.280 4.280 19 C 0.119 3.881 20 N -0.555 5.555 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.412 0.588 25 H 0.135 0.865 26 H 0.281 0.719 27 H 0.104 0.896 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -1.038 -1.033 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.110 4.110 3 C -0.215 4.215 4 C 0.398 3.602 5 O -0.337 6.337 6 N -0.290 5.290 7 C 0.109 3.891 8 C -0.260 4.260 9 C 0.133 3.867 10 C -0.484 4.484 11 H 0.101 0.899 12 C -0.144 4.144 13 N -0.421 5.421 14 Si 0.740 3.260 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.304 4.304 19 C -0.036 4.036 20 N -0.275 5.275 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.247 0.753 25 H 0.152 0.848 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.239 0.140 -1.838 9.421 hybrid contribution 0.554 -1.601 1.258 2.110 sum -8.685 -1.461 -0.580 8.826 Atomic orbital electron populations 1.19046 0.83747 1.03722 1.03760 1.22618 0.93790 0.97427 0.97183 1.21116 0.92718 1.03791 1.03900 1.14843 0.82081 0.82010 0.81217 1.90928 1.67803 1.36995 1.37998 1.43222 1.05715 1.34005 1.46055 1.18137 0.81984 0.93253 0.95677 1.21673 0.95415 1.01623 1.07240 1.17604 0.91155 0.89995 0.87995 1.19624 0.99365 1.17286 1.12113 0.89913 1.25967 0.94744 0.97430 0.96232 1.69743 1.15339 1.35840 1.21166 0.86139 0.80452 0.80415 0.79022 1.18324 1.19874 1.19679 1.21943 0.99340 0.99282 1.09793 1.21762 0.88546 0.97108 0.96150 1.67173 1.10268 1.24133 1.25888 0.89541 0.89326 0.89309 0.75258 0.84792 0.90803 0.87791 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.36 10.32 34.37 0.35 0.00 15 2 C -0.11 -1.45 14.13 -37.12 -0.52 -1.97 15 3 C -0.21 -3.63 13.62 -38.84 -0.53 -4.16 15 4 C 0.61 12.98 7.60 -14.33 -0.11 12.87 15 5 O -0.47 -11.66 15.38 5.26 0.08 -11.58 15 6 N -0.64 -13.49 5.38 -13.70 -0.07 -13.56 15 7 C 0.33 8.30 7.40 -154.78 -1.15 7.15 15 8 C -0.23 -5.98 8.61 -38.47 -0.33 -6.31 15 9 C 0.14 3.70 5.60 -106.55 -0.60 3.11 15 10 C -0.45 -11.56 9.14 -37.65 -0.34 -11.90 15 11 H 0.08 2.02 7.87 -52.49 -0.41 1.61 15 12 C 0.07 1.78 5.31 -17.34 -0.09 1.69 15 13 N -0.79 -19.45 10.70 55.55 0.59 -18.86 15 14 Si 0.92 17.86 29.57 -169.99 -5.03 12.83 15 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 17 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 18 C -0.28 -6.86 9.90 -38.70 -0.38 -7.25 15 19 C 0.12 2.87 11.15 -17.68 -0.20 2.67 15 20 N -0.56 -14.50 7.89 -12.54 -0.10 -14.60 15 21 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.09 0.54 8.14 -51.93 -0.42 0.11 15 24 H 0.41 7.18 8.66 -40.82 -0.35 6.82 15 25 H 0.13 3.38 6.11 -52.49 -0.32 3.06 15 26 H 0.28 6.21 8.29 -40.82 -0.34 5.87 15 27 H 0.10 2.32 8.06 -52.49 -0.42 1.90 15 28 H 0.13 2.63 8.06 -52.49 -0.42 2.20 15 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -31.63 264.48 -6.77 -38.40 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.33 Total: 7.49 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.90 Total: -4.10 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.42 Total: -47.02 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.63 -6.77 -38.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801169990.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.942 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds