Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17398 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 178.16441 * 3 2 1 5 5 O 1.21623 * 119.99856 * 138.11804 * 4 3 2 6 6 N 1.34780 * 120.00468 * 318.12448 * 4 3 2 7 7 C 1.39367 * 120.00311 * 185.08204 * 6 4 3 8 8 C 1.38629 * 119.58069 * 185.36220 * 7 6 4 9 9 C 1.40795 * 118.79026 * 179.74801 * 8 7 6 10 10 C 1.41550 * 120.99540 * 180.22783 * 9 8 7 11 11 H 1.07998 * 119.99600 * 153.75719 * 10 9 8 12 12 C 1.40031 * 119.99933 * 333.75663 * 10 9 8 13 13 N 1.30742 * 119.99992 * 350.16231 * 12 10 9 14 14 Si 1.86801 * 119.99832 * 170.15678 * 12 10 9 15 15 H 1.48501 * 109.47011 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46639 * 120.00018 * 14 12 10 17 17 H 1.48495 * 109.46982 * 240.00172 * 14 12 10 18 18 C 1.41187 * 118.01247 * 0.24996 * 9 8 7 19 19 C 1.37581 * 119.01802 * 0.02562 * 18 9 8 20 20 N 1.32086 * 121.11525 * 0.02562 * 19 18 9 21 21 H 1.08998 * 109.47081 * 43.71261 * 1 2 3 22 22 H 1.08997 * 109.47339 * 163.71410 * 1 2 3 23 23 H 1.09001 * 109.46902 * 283.71673 * 1 2 3 24 24 H 0.97004 * 119.99498 * 5.07222 * 6 4 3 25 25 H 1.08001 * 120.60534 * 0.02562 * 8 7 6 26 26 H 0.97000 * 120.00369 * 180.02562 * 13 12 10 27 27 H 1.07994 * 120.48985 * 179.97438 * 18 9 8 28 28 H 1.08002 * 119.44391 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0018 0.0000 5 8 4.6853 0.7866 -0.7032 6 7 4.7527 -0.8667 0.7791 7 6 6.1422 -0.7958 0.8602 8 6 6.8361 -1.7606 1.5740 9 6 8.2400 -1.6759 1.6407 10 6 8.9953 -2.6384 2.3525 11 1 10.0204 -2.8337 2.0743 12 6 8.4134 -3.3372 3.4174 13 7 7.2461 -2.9716 3.8790 14 14 9.3049 -4.7918 4.1781 15 1 10.5989 -4.9995 3.4799 16 1 9.5568 -4.5208 5.6163 17 1 8.4678 -6.0109 4.0432 18 6 8.8718 -0.6020 0.9766 19 6 8.0980 0.3108 0.2976 20 7 6.7827 0.1965 0.2599 21 1 -0.3633 0.7428 -0.7101 22 1 -0.3634 -0.9864 -0.2882 23 1 -0.3633 0.2437 0.9984 24 1 4.2712 -1.5410 1.2834 25 1 6.3098 -2.5650 2.0663 26 1 6.8431 -3.4554 4.6169 27 1 9.9464 -0.4982 1.0020 28 1 8.5742 1.1347 -0.2131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801169990.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 30.496500 kcal Electronic energy + Delta-G solvation = -14550.891522 eV Core-core repulsion = 11953.550084 eV Total energy + Delta-G solvation = -2597.341438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33560 -39.59415 -36.20031 -35.62306 -35.16140 -32.49616 -30.92004 -29.40723 -27.95049 -24.88882 -23.87061 -22.31425 -20.02451 -19.55158 -17.69671 -17.19415 -16.53941 -16.36696 -16.08374 -15.72764 -15.34171 -14.68474 -14.57652 -14.42991 -14.35548 -14.12485 -13.19527 -12.88562 -12.72727 -12.22260 -11.88010 -11.70160 -11.58292 -11.28676 -11.23788 -11.18084 -9.98338 -9.72541 -8.96148 -8.61463 -6.60445 0.29783 0.95906 1.02149 1.24791 1.41818 1.56409 1.56892 2.02250 2.20301 2.48285 2.82442 3.20535 3.69893 4.05687 4.43763 4.71292 4.75687 4.80917 4.81811 4.88783 5.02146 5.04219 5.22252 5.42706 5.54906 5.88641 6.06331 6.23740 6.37006 6.50019 6.75303 6.81205 7.07551 7.74463 8.27577 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.006299 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.587947 B = 4443.881287 C = 5281.925827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.034 4.034 3 C -0.297 4.297 4 C 0.617 3.383 5 O -0.518 6.518 6 N -0.638 5.638 7 C 0.328 3.672 8 C -0.250 4.250 9 C 0.112 3.888 10 C -0.479 4.479 11 H 0.086 0.914 12 C 0.035 3.965 13 N -0.817 5.817 14 Si 0.992 3.008 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.262 1.262 18 C -0.291 4.291 19 C 0.113 3.887 20 N -0.583 5.583 21 H 0.110 0.890 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.425 0.575 25 H 0.131 0.869 26 H 0.292 0.708 27 H 0.121 0.879 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -2.023 -0.330 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 C -0.300 4.300 4 C 0.405 3.595 5 O -0.393 6.393 6 N -0.285 5.285 7 C 0.103 3.897 8 C -0.275 4.275 9 C 0.103 3.897 10 C -0.510 4.510 11 H 0.104 0.896 12 C -0.181 4.181 13 N -0.443 5.443 14 Si 0.813 3.187 15 H -0.181 1.181 16 H -0.191 1.191 17 H -0.187 1.187 18 C -0.315 4.315 19 C -0.041 4.041 20 N -0.303 5.303 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.134 0.866 24 H 0.263 0.737 25 H 0.149 0.851 26 H 0.103 0.897 27 H 0.139 0.861 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.994 -0.850 -1.126 11.084 hybrid contribution 0.908 -1.279 1.057 1.891 sum -10.086 -2.129 -0.069 10.308 Atomic orbital electron populations 1.19585 0.79132 1.06128 1.06061 1.23803 0.94674 0.92748 0.92451 1.20453 0.92127 1.08638 1.08743 1.15226 0.83821 0.80647 0.79773 1.90870 1.69522 1.38848 1.40025 1.43206 1.04505 1.34535 1.46212 1.18375 0.83562 0.92761 0.95007 1.21649 0.95528 1.02105 1.08263 1.18051 0.91895 0.90956 0.88774 1.19918 0.99800 1.18195 1.13078 0.89569 1.26869 0.95473 0.99712 0.96087 1.69780 1.16383 1.36712 1.21455 0.84994 0.79128 0.76556 0.78052 1.18094 1.19104 1.18679 1.22147 1.00275 0.99120 1.09960 1.22246 0.88274 0.97732 0.95818 1.67290 1.11184 1.24962 1.26901 0.87180 0.86473 0.86643 0.73683 0.85126 0.89694 0.86085 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.32 70.18 0.72 0.18 15 2 C -0.03 -0.83 14.13 31.13 0.44 -0.39 15 3 C -0.30 -10.10 13.62 30.01 0.41 -9.69 15 4 C 0.62 27.11 7.60 85.49 0.65 27.76 15 5 O -0.52 -27.11 15.38 -4.10 -0.06 -27.18 15 6 N -0.64 -27.75 5.38 -315.50 -1.70 -29.45 15 7 C 0.33 16.93 7.40 132.79 0.98 17.92 15 8 C -0.25 -13.20 8.61 22.99 0.20 -13.00 15 9 C 0.11 6.02 5.60 -21.11 -0.12 5.90 15 10 C -0.48 -24.78 9.14 23.52 0.21 -24.57 15 11 H 0.09 4.25 7.87 -2.91 -0.02 4.22 15 12 C 0.03 1.66 5.31 85.29 0.45 2.11 15 13 N -0.82 -40.05 10.70 21.84 0.23 -39.82 15 14 Si 0.99 35.82 29.57 68.60 2.03 37.85 15 15 H -0.26 -9.13 7.11 99.48 0.71 -8.43 15 16 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 17 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 18 C -0.29 -14.60 9.90 22.84 0.23 -14.38 15 19 C 0.11 5.59 11.15 84.50 0.94 6.53 15 20 N -0.58 -31.49 7.89 -193.58 -1.53 -33.02 15 21 H 0.11 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.12 0.70 8.14 -2.39 -0.02 0.69 15 23 H 0.12 0.74 8.14 -2.39 -0.02 0.72 15 24 H 0.43 15.37 8.66 -92.71 -0.80 14.56 15 25 H 0.13 6.83 6.11 -2.91 -0.02 6.81 15 26 H 0.29 12.73 8.29 -92.71 -0.77 11.96 15 27 H 0.12 5.46 8.06 -2.91 -0.02 5.44 15 28 H 0.15 6.45 8.06 -2.91 -0.02 6.43 15 Total: -1.00 -71.47 264.48 4.50 -66.97 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.40 Total: 26.28 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.12 Total: -1.63 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -2.99 Total: -102.29 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.06 Total: -27.18 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -71.47 4.50 -66.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801169990.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.462 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds