Wall clock time and date at job start Sun Mar 29 2020 21:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48926 * 169.62736 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31739 * 122.03770 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.87775 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.48845 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99802 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99799 * 0.05480 * 8 7 6 11 11 C 1.46504 * 119.99463 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47067 * 179.97438 * 11 10 8 13 13 H 1.08010 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00240 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00043 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99737 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47089 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.47050 * 209.99312 * 16 14 12 19 19 H 1.48502 * 109.47241 * 329.99846 * 16 14 12 20 20 C 1.39678 * 120.48945 * 349.60903 * 3 2 1 21 21 H 4.52734 * 13.92750 * 0.02562 * 4 2 1 22 22 H 1.08001 * 119.56006 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.55680 * 179.97438 * 6 5 4 24 24 H 0.96999 * 120.00139 * 359.97438 * 10 8 7 25 25 H 1.08998 * 109.46710 * 299.99160 * 11 10 8 26 26 H 1.09001 * 109.47029 * 59.99621 * 11 10 8 27 27 H 0.96997 * 120.00249 * 180.02562 * 15 14 12 28 28 H 1.07999 * 120.92008 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1845 -0.2166 5 7 4.6314 1.1941 -0.2178 6 6 5.3384 0.1009 -0.0166 7 6 4.7119 -1.1261 0.2091 8 6 5.5139 -2.3479 0.4334 9 8 4.9592 -3.4116 0.6286 10 7 6.8600 -2.2819 0.4220 11 6 7.6545 -3.4924 0.6448 12 6 9.1207 -3.1496 0.5819 13 1 9.4297 -2.1316 0.3951 14 6 10.0676 -4.1351 0.7639 15 7 11.3471 -3.8358 0.7095 16 14 9.5331 -5.8955 1.0877 17 1 9.3921 -6.6154 -0.2035 18 1 10.5529 -6.5764 1.9253 19 1 8.2292 -5.8941 1.7985 20 6 3.3152 -1.1829 0.2171 21 1 -1.0500 -0.0010 0.0007 22 1 2.7743 2.1047 -0.3855 23 1 6.4170 0.1547 -0.0264 24 1 7.3027 -1.4329 0.2663 25 1 7.4195 -3.9058 1.6256 26 1 7.4203 -4.2276 -0.1251 27 1 12.0132 -4.5292 0.8372 28 1 2.7988 -2.1160 0.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807430309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:59 Heat of formation + Delta-G solvation = 50.336126 kcal Electronic energy + Delta-G solvation = -14354.953032 eV Core-core repulsion = 11758.471904 eV Total energy + Delta-G solvation = -2596.481127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58010 -38.62713 -34.73760 -34.34047 -32.64289 -32.20050 -30.76717 -28.04468 -24.77816 -24.09381 -22.09213 -20.70271 -19.19342 -17.61102 -17.08511 -16.63472 -16.16244 -15.07018 -14.94530 -14.92483 -14.15271 -13.95205 -13.33808 -13.04414 -12.67573 -12.41616 -12.29637 -11.85520 -11.12586 -11.02406 -10.82612 -10.11862 -9.96438 -9.85665 -9.55868 -9.34359 -9.00960 -8.83429 -8.29479 -6.25539 -4.28763 0.39055 0.82909 2.41783 2.64192 3.23514 3.29409 3.30738 3.38410 3.65429 3.91814 3.94689 4.20648 4.29491 4.60652 4.72697 4.95600 5.09534 5.13675 5.31103 5.63492 5.86017 5.92660 6.32857 6.71421 6.98288 7.04239 7.20232 7.29364 7.64474 8.01274 8.38091 8.63338 8.76012 9.33315 10.86154 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.051943 B = 0.005162 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.918288 B = 5423.102263 C = 5946.876653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.053 4.053 4 C 0.140 3.860 5 N -0.482 5.482 6 C 0.141 3.859 7 C -0.171 4.171 8 C 0.547 3.453 9 O -0.549 6.549 10 N -0.694 5.694 11 C 0.219 3.781 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.001 3.999 21 H 0.227 0.773 22 H 0.163 0.837 23 H 0.168 0.832 24 H 0.397 0.603 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.268 0.732 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 8.498 -1.543 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.055 4.055 4 C -0.018 4.018 5 N -0.189 5.189 6 C -0.016 4.016 7 C -0.176 4.176 8 C 0.331 3.669 9 O -0.429 6.429 10 N -0.342 5.342 11 C 0.098 3.902 12 C -0.584 4.584 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.025 4.025 21 H 0.243 0.757 22 H 0.181 0.819 23 H 0.185 0.815 24 H 0.232 0.768 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.578 8.421 -1.525 18.656 hybrid contribution -0.468 -1.314 0.218 1.412 sum -17.045 7.107 -1.307 18.514 Atomic orbital electron populations 1.24886 0.95683 0.98587 0.99126 1.19629 0.91484 1.01959 1.01614 1.16855 0.88085 0.94969 1.05581 1.23098 0.89786 0.96797 0.92148 1.67738 1.07464 1.30201 1.13533 1.23243 1.00882 0.86759 0.90747 1.21183 0.94748 0.96069 1.05648 1.17978 0.82980 0.87473 0.78444 1.90742 1.71556 1.29978 1.50607 1.46152 1.04734 1.13927 1.69393 1.19589 0.90918 0.83004 0.96716 1.21059 0.87772 0.97787 1.51828 0.90089 1.24788 0.94650 0.99159 0.93962 1.69873 1.00070 1.34137 1.48574 0.86821 0.79209 0.84509 0.79175 1.19801 1.20832 1.18496 1.21815 0.92569 0.98107 0.89987 0.75670 0.81941 0.81490 0.76792 0.95294 0.95748 0.92176 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 19.25 29.55 0.57 -0.82 15 2 C -0.15 -1.59 13.27 -38.83 -0.52 -2.11 15 3 C -0.05 -0.64 5.73 -106.91 -0.61 -1.25 15 4 C 0.14 1.58 10.90 -17.07 -0.19 1.40 15 5 N -0.48 -6.26 10.33 -12.59 -0.13 -6.39 15 6 C 0.14 1.89 10.71 -17.08 -0.18 1.70 15 7 C -0.17 -2.59 5.88 -104.87 -0.62 -3.20 15 8 C 0.55 10.39 7.78 -12.32 -0.10 10.29 15 9 O -0.55 -12.25 16.41 5.32 0.09 -12.16 15 10 N -0.69 -13.68 5.50 -62.42 -0.34 -14.02 15 11 C 0.22 5.25 4.50 -5.19 -0.02 5.23 15 12 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 15 13 H 0.08 2.24 7.84 -52.48 -0.41 1.83 15 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 15 15 N -0.89 -26.00 13.96 55.43 0.77 -25.22 15 16 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 15 17 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 19 H -0.26 -6.20 6.54 56.52 0.37 -5.83 15 20 C 0.00 0.02 9.44 -38.46 -0.36 -0.34 15 21 H 0.23 0.95 7.80 -54.09 -0.42 0.53 15 22 H 0.16 1.35 8.06 -52.49 -0.42 0.93 15 23 H 0.17 1.94 6.41 -52.49 -0.34 1.61 15 24 H 0.40 6.75 6.38 -40.82 -0.26 6.49 15 25 H 0.03 0.73 7.20 -51.93 -0.37 0.36 15 26 H 0.02 0.61 7.57 -51.93 -0.39 0.21 15 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 28 H 0.15 2.08 7.73 -52.49 -0.41 1.67 15 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -32.01 264.49 -4.95 -36.96 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.19 Total: 2.47 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.46 Total: -1.99 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.30 Total: -45.63 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.01 -4.95 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807430309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.295 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds