Wall clock time and date at job start Sun Mar 29 2020 21:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48926 * 169.62736 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31739 * 122.03770 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.87775 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.48845 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99802 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99799 * 0.05480 * 8 7 6 11 11 C 1.46504 * 119.99463 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47067 * 179.97438 * 11 10 8 13 13 H 1.08010 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00240 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00043 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99737 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47089 * 89.99689 * 16 14 12 18 18 H 1.48502 * 109.47050 * 209.99312 * 16 14 12 19 19 H 1.48502 * 109.47241 * 329.99846 * 16 14 12 20 20 C 1.39678 * 120.48945 * 349.60903 * 3 2 1 21 21 H 4.52734 * 13.92750 * 0.02562 * 4 2 1 22 22 H 1.08001 * 119.56006 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.55680 * 179.97438 * 6 5 4 24 24 H 0.96999 * 120.00139 * 359.97438 * 10 8 7 25 25 H 1.08998 * 109.46710 * 299.99160 * 11 10 8 26 26 H 1.09001 * 109.47029 * 59.99621 * 11 10 8 27 27 H 0.96997 * 120.00249 * 180.02562 * 15 14 12 28 28 H 1.07999 * 120.92008 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1845 -0.2166 5 7 4.6314 1.1941 -0.2178 6 6 5.3384 0.1009 -0.0166 7 6 4.7119 -1.1261 0.2091 8 6 5.5139 -2.3479 0.4334 9 8 4.9592 -3.4116 0.6286 10 7 6.8600 -2.2819 0.4220 11 6 7.6545 -3.4924 0.6448 12 6 9.1207 -3.1496 0.5819 13 1 9.4297 -2.1316 0.3951 14 6 10.0676 -4.1351 0.7639 15 7 11.3471 -3.8358 0.7095 16 14 9.5331 -5.8955 1.0877 17 1 9.3921 -6.6154 -0.2035 18 1 10.5529 -6.5764 1.9253 19 1 8.2292 -5.8941 1.7985 20 6 3.3152 -1.1829 0.2171 21 1 -1.0500 -0.0010 0.0007 22 1 2.7743 2.1047 -0.3855 23 1 6.4170 0.1547 -0.0264 24 1 7.3027 -1.4329 0.2663 25 1 7.4195 -3.9058 1.6256 26 1 7.4203 -4.2276 -0.1251 27 1 12.0132 -4.5292 0.8372 28 1 2.7988 -2.1160 0.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807430309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:59 Heat of formation + Delta-G solvation = 27.702377 kcal Electronic energy + Delta-G solvation = -14355.934505 eV Core-core repulsion = 11758.471904 eV Total energy + Delta-G solvation = -2597.462600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72239 -40.07532 -36.34489 -35.38628 -34.49452 -33.45962 -31.73771 -29.88279 -26.00768 -25.20735 -23.79049 -22.14520 -20.44689 -18.97304 -18.34353 -17.90288 -17.56716 -16.60758 -16.43050 -16.22689 -15.70308 -15.14289 -14.83606 -14.41506 -14.22998 -14.12768 -13.64277 -13.09121 -12.72695 -12.68161 -11.94641 -11.81465 -11.66535 -11.43097 -10.96597 -10.92317 -10.58262 -10.10092 -9.86148 -8.39669 -6.47255 -0.61199 -0.21739 1.33742 1.36172 1.48080 1.59763 1.67410 2.14575 2.22493 2.28823 2.86974 2.95867 3.09738 3.27923 3.65317 3.67239 3.77443 4.08885 4.33373 4.73177 4.82177 4.84225 4.99491 5.03746 5.22931 5.35690 5.40281 6.05342 6.49305 6.51876 6.64992 6.69916 7.08650 7.24107 8.74731 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.051943 B = 0.005162 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.918288 B = 5423.102263 C = 5946.876653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.207 4.207 3 C -0.044 4.044 4 C 0.149 3.851 5 N -0.491 5.491 6 C 0.144 3.856 7 C -0.186 4.186 8 C 0.551 3.449 9 O -0.586 6.586 10 N -0.694 5.694 11 C 0.230 3.770 12 C -0.548 4.548 13 H 0.062 0.938 14 C 0.027 3.973 15 N -0.929 5.929 16 Si 0.937 3.063 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.007 4.007 21 H 0.267 0.733 22 H 0.197 0.803 23 H 0.179 0.821 24 H 0.410 0.590 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.273 0.727 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.324 9.274 -1.717 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.208 4.208 3 C -0.046 4.046 4 C -0.009 4.009 5 N -0.198 5.198 6 C -0.013 4.013 7 C -0.191 4.191 8 C 0.338 3.662 9 O -0.468 6.468 10 N -0.343 5.343 11 C 0.107 3.893 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.174 4.174 15 N -0.568 5.568 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.033 4.033 21 H 0.283 0.717 22 H 0.214 0.786 23 H 0.196 0.804 24 H 0.247 0.753 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.001 9.233 -1.707 21.194 hybrid contribution 0.110 -1.417 0.247 1.443 sum -18.891 7.816 -1.460 20.496 Atomic orbital electron populations 1.25876 0.96373 0.95495 0.95578 1.19763 0.91749 1.04829 1.04467 1.16930 0.89205 0.94250 1.04258 1.23669 0.89308 0.97828 0.90072 1.67833 1.08351 1.29648 1.13984 1.23358 1.01524 0.86219 0.90191 1.20787 0.94836 0.94853 1.08617 1.18443 0.82520 0.88298 0.76890 1.90710 1.72114 1.31796 1.52223 1.45947 1.05120 1.13312 1.69901 1.19214 0.89779 0.84453 0.95864 1.21262 0.89307 0.97070 1.50966 0.91953 1.25590 0.94653 1.03247 0.93889 1.69975 1.01179 1.35622 1.49979 0.85868 0.78907 0.79796 0.79393 1.18987 1.19895 1.18309 1.21855 0.92161 0.98878 0.90416 0.71732 0.78622 0.80371 0.75316 0.96340 0.96445 0.91825 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 19.25 74.32 1.43 -0.07 15 2 C -0.21 -4.00 13.27 30.02 0.40 -3.60 15 3 C -0.04 -1.01 5.73 -21.35 -0.12 -1.13 15 4 C 0.15 3.04 10.90 85.04 0.93 3.97 15 5 N -0.49 -11.91 10.33 -193.76 -2.00 -13.92 15 6 C 0.14 3.75 10.71 85.04 0.91 4.66 15 7 C -0.19 -5.59 5.88 -20.03 -0.12 -5.71 15 8 C 0.55 21.21 7.78 86.79 0.68 21.88 15 9 O -0.59 -26.62 16.41 -3.87 -0.06 -26.68 15 10 N -0.69 -27.64 5.50 -469.69 -2.58 -30.23 15 11 C 0.23 11.12 4.50 85.63 0.38 11.51 15 12 C -0.55 -29.78 9.83 25.60 0.25 -29.53 15 13 H 0.06 3.54 7.84 -2.91 -0.02 3.51 15 14 C 0.03 1.50 5.47 84.65 0.46 1.96 15 15 N -0.93 -54.93 13.96 21.45 0.30 -54.64 15 16 Si 0.94 43.48 27.47 68.60 1.88 45.36 15 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 15 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 19 H -0.26 -11.86 6.54 99.48 0.65 -11.21 15 20 C -0.01 -0.19 9.44 22.99 0.22 0.03 15 21 H 0.27 0.78 7.80 -4.42 -0.03 0.75 15 22 H 0.20 2.59 8.06 -2.91 -0.02 2.57 15 23 H 0.18 4.04 6.41 -2.91 -0.02 4.02 15 24 H 0.41 14.05 6.38 -92.71 -0.59 13.46 15 25 H 0.02 0.94 7.20 -2.39 -0.02 0.92 15 26 H 0.02 0.88 7.57 -2.39 -0.02 0.86 15 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 28 H 0.14 4.05 7.73 -2.91 -0.02 4.02 15 Total: -1.00 -69.21 264.49 3.50 -65.71 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.55 Total: 10.43 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.42 Total: 3.96 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -4.29 Total: -98.78 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -69.21 3.50 -65.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807430309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.416 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds