Wall clock time and date at job start Sun Mar 29 2020 21:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.21205 * 120.00099 * 359.97438 * 10 9 8 12 12 O 1.34317 * 119.99558 * 179.97438 * 10 9 8 13 13 C 1.34917 * 116.99500 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00231 * 0.02562 * 13 12 10 15 15 C 1.38753 * 120.00145 * 179.97438 * 13 12 10 16 16 N 1.31442 * 120.00274 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99685 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47267 * 89.99925 * 17 15 13 19 19 H 1.48500 * 109.47311 * 210.00021 * 17 15 13 20 20 H 1.48498 * 109.46966 * 330.00028 * 17 15 13 21 21 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 22 22 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 23 23 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 25 25 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 26 26 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 27 27 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 28 28 H 0.97003 * 119.99750 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5247 -2.4317 2.0544 12 8 1.5285 -1.8467 3.9430 13 6 1.2425 -3.1474 4.1590 14 1 1.5541 -3.8948 3.4442 15 6 0.5491 -3.5252 5.2999 16 7 0.2709 -4.7924 5.5105 17 14 0.0109 -2.2326 6.5365 18 1 -1.3428 -1.7382 6.1784 19 1 -0.0242 -2.8315 7.8950 20 1 0.9719 -1.1006 6.5192 21 1 -1.0500 0.0005 0.0001 22 1 2.7702 0.1090 -2.1414 23 1 5.2297 0.1113 -2.1304 24 1 6.4551 0.0029 0.0002 25 1 5.2299 -0.1077 2.1302 26 1 3.1852 0.2811 3.3091 27 1 1.6462 0.4753 2.4363 28 1 -0.2142 -5.0564 6.3080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811258699.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:50 Heat of formation + Delta-G solvation = -1.921734 kcal Electronic energy + Delta-G solvation = -14859.377145 eV Core-core repulsion = 12228.337195 eV Total energy + Delta-G solvation = -2631.039949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72898 -38.65960 -35.37035 -33.73234 -32.47296 -32.21248 -30.08392 -27.95656 -25.16598 -23.17582 -21.90133 -19.82798 -18.56362 -17.92023 -16.65778 -16.13880 -15.62924 -15.12175 -14.81745 -14.47627 -13.81306 -13.56975 -13.14618 -12.77712 -12.37407 -12.15007 -11.91173 -11.33918 -11.26370 -11.05303 -10.96176 -10.43927 -10.33462 -10.22468 -9.66763 -9.17365 -8.70223 -8.64538 -8.31698 -6.33160 -4.08694 1.07808 1.45560 2.95487 3.16858 3.19430 3.25811 3.37674 3.45488 3.97887 4.26922 4.39380 4.52944 4.86174 4.95905 5.07584 5.13890 5.36395 5.55471 5.64667 5.78303 5.86660 6.04897 6.22037 6.42810 6.51841 6.54740 6.68534 7.03538 7.74159 7.78273 8.07910 8.67345 9.05574 9.73323 10.75634 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.037479 B = 0.006815 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.911230 B = 4107.436900 C = 4339.643875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.146 4.146 3 C 0.026 3.974 4 C -0.098 4.098 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.105 4.105 8 C -0.036 4.036 9 C -0.073 4.073 10 C 0.414 3.586 11 O -0.529 6.529 12 O -0.254 6.254 13 C -0.380 4.380 14 H 0.108 0.892 15 C 0.065 3.935 16 N -0.877 5.877 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.260 1.260 21 H 0.223 0.777 22 H 0.124 0.876 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 13.148 -8.877 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C 0.026 3.974 4 C -0.116 4.116 5 C -0.142 4.142 6 C -0.130 4.130 7 C -0.123 4.123 8 C -0.036 4.036 9 C -0.111 4.111 10 C 0.259 3.741 11 O -0.423 6.423 12 O -0.164 6.164 13 C -0.456 4.456 14 H 0.126 0.874 15 C -0.138 4.138 16 N -0.517 5.517 17 Si 0.730 3.270 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 H 0.240 0.760 22 H 0.142 0.858 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.414 12.753 -8.921 16.478 hybrid contribution -0.527 0.212 0.613 0.835 sum 4.887 12.965 -8.308 16.156 Atomic orbital electron populations 1.24855 0.95766 0.99278 0.99260 1.19945 0.92040 1.01315 1.01287 1.15802 0.86631 1.01779 0.93203 1.21102 0.94210 0.99691 0.96641 1.20999 0.93808 1.01247 0.98144 1.21172 0.99876 0.99638 0.92310 1.20956 0.92970 0.99709 0.98684 1.19444 0.93496 0.97668 0.92966 1.20152 1.01815 0.93757 0.95374 1.22672 0.79587 0.90557 0.81264 1.90618 1.53331 1.49436 1.48926 1.83515 1.63091 1.31065 1.38681 1.20638 1.36531 0.79536 1.08852 0.87421 1.24534 0.95762 0.96498 0.97034 1.69613 1.38933 1.15080 1.28064 0.86228 0.79683 0.81519 0.79570 1.19907 1.20795 1.18417 0.75989 0.85786 0.85771 0.85795 0.85460 0.87743 0.87985 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 19.25 29.55 0.57 -2.07 15 2 C -0.15 -2.49 11.79 -38.84 -0.46 -2.95 15 3 C 0.03 0.43 5.72 -107.00 -0.61 -0.18 15 4 C -0.10 -1.37 9.75 -39.20 -0.38 -1.76 15 5 C -0.12 -1.50 10.03 -39.64 -0.40 -1.90 15 6 C -0.11 -1.39 10.04 -39.50 -0.40 -1.79 15 7 C -0.11 -1.53 9.67 -39.64 -0.38 -1.92 15 8 C -0.04 -0.60 4.41 -104.23 -0.46 -1.06 15 9 C -0.07 -1.31 5.46 -29.04 -0.16 -1.47 15 10 C 0.41 10.10 7.90 36.00 0.28 10.38 15 11 O -0.53 -14.62 15.27 -19.05 -0.29 -14.91 15 12 O -0.25 -6.90 8.58 -20.71 -0.18 -7.08 15 13 C -0.38 -11.58 10.10 30.92 0.31 -11.27 15 14 H 0.11 3.63 7.09 -52.48 -0.37 3.26 15 15 C 0.06 1.89 5.49 -17.53 -0.10 1.80 15 16 N -0.88 -26.45 13.96 55.48 0.77 -25.68 15 17 Si 0.90 21.70 28.62 -169.99 -4.86 16.84 15 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 20 H -0.26 -6.08 7.11 56.52 0.40 -5.68 15 21 H 0.22 2.46 7.80 -54.09 -0.42 2.03 15 22 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 23 H 0.12 1.11 8.06 -52.48 -0.42 0.69 15 24 H 0.12 1.17 8.06 -52.49 -0.42 0.74 15 25 H 0.13 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.10 1.55 8.05 -51.93 -0.42 1.14 15 27 H 0.10 1.69 7.28 -51.93 -0.38 1.31 15 28 H 0.28 7.66 8.31 -40.82 -0.34 7.32 15 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -34.92 268.12 -5.11 -40.03 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.42 Total: 0.94 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.18 Total: -14.18 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.77 Total: -25.68 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.47 Total: -21.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.92 -5.11 -40.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811258699.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.110 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds