Wall clock time and date at job start Sun Mar 29 2020 21:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.21205 * 120.00099 * 359.97438 * 10 9 8 12 12 O 1.34317 * 119.99558 * 179.97438 * 10 9 8 13 13 C 1.34917 * 116.99500 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00231 * 0.02562 * 13 12 10 15 15 C 1.38753 * 120.00145 * 179.97438 * 13 12 10 16 16 N 1.31442 * 120.00274 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99685 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47267 * 89.99925 * 17 15 13 19 19 H 1.48500 * 109.47311 * 210.00021 * 17 15 13 20 20 H 1.48498 * 109.46966 * 330.00028 * 17 15 13 21 21 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 22 22 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 23 23 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 25 25 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 26 26 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 27 27 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 28 28 H 0.97003 * 119.99750 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5247 -2.4317 2.0544 12 8 1.5285 -1.8467 3.9430 13 6 1.2425 -3.1474 4.1590 14 1 1.5541 -3.8948 3.4442 15 6 0.5491 -3.5252 5.2999 16 7 0.2709 -4.7924 5.5105 17 14 0.0109 -2.2326 6.5365 18 1 -1.3428 -1.7382 6.1784 19 1 -0.0242 -2.8315 7.8950 20 1 0.9719 -1.1006 6.5192 21 1 -1.0500 0.0005 0.0001 22 1 2.7702 0.1090 -2.1414 23 1 5.2297 0.1113 -2.1304 24 1 6.4551 0.0029 0.0002 25 1 5.2299 -0.1077 2.1302 26 1 3.1852 0.2811 3.3091 27 1 1.6462 0.4753 2.4363 28 1 -0.2142 -5.0564 6.3080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811258699.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:50 Heat of formation + Delta-G solvation = -23.385632 kcal Electronic energy + Delta-G solvation = -14860.307889 eV Core-core repulsion = 12228.337195 eV Total energy + Delta-G solvation = -2631.970694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38555 -40.13961 -37.40812 -34.89648 -34.51882 -33.71005 -31.17937 -29.41816 -27.21115 -24.26293 -23.25162 -21.54661 -20.17193 -19.67182 -18.63861 -17.23771 -17.15884 -16.78402 -16.22010 -16.07630 -15.68885 -14.67884 -14.59592 -14.23019 -14.11571 -13.69541 -13.65931 -12.97371 -12.47134 -12.39153 -12.27231 -12.18657 -12.10727 -11.87129 -11.39762 -11.17740 -10.84608 -9.81274 -9.43131 -8.55683 -6.42974 -0.03177 0.36867 1.28822 1.33105 1.52233 1.57513 1.74379 2.06290 2.26582 2.43756 2.89790 3.08831 3.38657 3.61671 3.87964 4.14661 4.29135 4.41916 4.43498 4.56001 4.65825 4.73284 5.05030 5.17061 5.46266 5.47533 5.51844 5.56020 5.87929 6.01985 6.52608 6.55324 6.81304 7.57806 8.57590 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.037479 B = 0.006815 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.911230 B = 4107.436900 C = 4339.643875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.190 4.190 3 C -0.004 4.004 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.069 4.069 9 C -0.061 4.061 10 C 0.415 3.585 11 O -0.567 6.567 12 O -0.259 6.259 13 C -0.409 4.409 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.919 5.919 17 Si 0.985 3.015 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.248 1.248 21 H 0.255 0.745 22 H 0.140 0.860 23 H 0.162 0.838 24 H 0.159 0.841 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 15.454 -8.667 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.190 4.190 3 C -0.004 4.004 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.128 4.128 7 C -0.134 4.134 8 C -0.069 4.069 9 C -0.098 4.098 10 C 0.262 3.738 11 O -0.462 6.462 12 O -0.169 6.169 13 C -0.485 4.485 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.559 5.559 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.172 1.172 21 H 0.272 0.728 22 H 0.158 0.842 23 H 0.179 0.821 24 H 0.177 0.823 25 H 0.159 0.841 26 H 0.156 0.844 27 H 0.134 0.866 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.010 15.054 -8.733 18.412 hybrid contribution -0.627 -0.561 0.362 0.916 sum 5.382 14.493 -8.371 17.581 Atomic orbital electron populations 1.25753 0.96710 0.98137 0.97863 1.20582 0.93085 1.02589 1.02717 1.16175 0.86917 1.02983 0.94341 1.21429 0.95352 0.99490 0.96418 1.21483 0.93185 0.98895 0.99741 1.21625 1.01681 0.97921 0.91525 1.21280 0.92288 0.99423 1.00452 1.19533 0.94588 1.00371 0.92386 1.20268 1.03321 0.88795 0.97423 1.24139 0.77199 0.93002 0.79498 1.90591 1.54352 1.51507 1.49780 1.83529 1.64282 1.28874 1.40193 1.20290 1.38852 0.80217 1.09108 0.92921 1.25603 0.94777 0.99274 0.98790 1.69713 1.39353 1.17503 1.29312 0.85060 0.79769 0.78186 0.76583 1.18381 1.18888 1.17172 0.72845 0.84242 0.82063 0.82301 0.84051 0.84378 0.86627 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 19.25 74.32 1.43 -3.58 15 2 C -0.19 -6.52 11.79 30.02 0.35 -6.17 15 3 C 0.00 -0.14 5.72 -21.40 -0.12 -0.26 15 4 C -0.11 -2.91 9.75 22.52 0.22 -2.69 15 5 C -0.12 -2.47 10.03 22.23 0.22 -2.24 15 6 C -0.11 -2.41 10.04 22.32 0.22 -2.19 15 7 C -0.12 -3.21 9.67 22.23 0.21 -2.99 15 8 C -0.07 -2.29 4.41 -19.61 -0.09 -2.37 15 9 C -0.06 -2.14 5.46 29.10 0.16 -1.98 15 10 C 0.41 20.62 7.90 71.23 0.56 21.18 15 11 O -0.57 -32.68 15.27 20.79 0.32 -32.37 15 12 O -0.26 -14.28 8.58 14.84 0.13 -14.15 15 13 C -0.41 -25.94 10.10 67.94 0.69 -25.25 15 14 H 0.05 3.82 7.09 -2.91 -0.02 3.80 15 15 C 0.02 0.90 5.49 84.87 0.47 1.36 15 16 N -0.92 -56.61 13.96 21.62 0.30 -56.31 15 17 Si 0.98 44.10 28.62 68.60 1.96 46.06 15 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 20 H -0.25 -10.58 7.11 99.48 0.71 -9.87 15 21 H 0.26 5.24 7.80 -4.42 -0.03 5.21 15 22 H 0.14 3.11 8.06 -2.91 -0.02 3.09 15 23 H 0.16 2.20 8.06 -2.91 -0.02 2.17 15 24 H 0.16 2.32 8.06 -2.91 -0.02 2.29 15 25 H 0.14 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.14 3.84 8.05 -2.39 -0.02 3.82 15 27 H 0.12 3.72 7.28 -2.39 -0.02 3.70 15 28 H 0.29 16.01 8.31 -92.71 -0.77 15.24 15 Total: -1.00 -79.95 268.12 8.21 -71.75 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.16 Total: 12.20 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.33 Total: -27.18 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: 0.44 Total: -46.52 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.96 Total: 46.06 kcal Total: -79.95 8.21 -71.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811258699.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.360 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds