Wall clock time and date at job start Sun Mar 29 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 115.55240 * 2 1 4 4 O 1.45208 * 109.46666 * 34.32965 * 3 2 1 5 5 C 1.34232 * 116.99618 * 180.02562 * 4 3 2 6 6 O 1.20826 * 120.00236 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00079 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47466 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.52996 * 117.50165 * 214.32962 * 2 1 3 18 18 C 1.52994 * 60.00250 * 252.48593 * 17 2 1 19 19 H 1.09006 * 117.50058 * 107.48545 * 18 17 2 20 20 F 1.39897 * 117.50098 * 252.51187 * 18 17 2 21 21 H 1.08997 * 109.47372 * 85.57905 * 1 2 3 22 22 H 1.08993 * 109.47426 * 205.58436 * 1 2 3 23 23 H 1.09002 * 109.47305 * 325.58572 * 1 2 3 24 24 H 1.08998 * 109.47407 * 274.33498 * 3 2 1 25 25 H 1.08996 * 109.47314 * 154.32426 * 3 2 1 26 26 H 1.09002 * 109.47120 * 59.99588 * 7 5 4 27 27 H 1.08998 * 109.46862 * 300.00390 * 7 5 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 5 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 5 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.09004 * 117.49703 * 359.97427 * 17 2 1 32 32 H 1.09005 * 117.50336 * 144.99575 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3786 2.3046 0.7721 5 6 1.8213 3.5680 0.8708 6 8 2.8527 3.8908 0.3305 7 6 1.0325 4.5836 1.6566 8 6 1.7511 5.9335 1.6114 9 6 0.9619 6.9492 2.3967 10 1 0.0403 6.6606 2.8801 11 6 1.4171 8.2467 2.4989 12 7 2.5397 8.5980 1.9107 13 14 0.4393 9.5055 3.4729 14 1 0.3188 9.0555 4.8830 15 1 1.1367 10.8158 3.4289 16 1 -0.9153 9.6461 2.8808 17 6 2.2364 -1.1207 -0.7653 18 6 2.2369 -1.1209 0.7646 19 1 1.6119 -1.8586 1.2680 20 9 3.4371 -0.8052 1.4103 21 1 -0.3634 0.0792 -1.0246 22 1 -0.3634 -0.9268 0.4437 23 1 -0.3634 0.8478 0.5808 24 1 2.2766 1.7417 -1.0247 25 1 3.1822 1.3087 0.4452 26 1 0.9447 4.2536 2.6918 27 1 0.0380 4.6861 1.2225 28 1 1.8392 6.2637 0.5764 29 1 2.7454 5.8306 2.0459 30 1 2.8597 9.5109 1.9824 31 1 1.6112 -1.8583 -1.2685 32 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822152906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:32 Heat of formation + Delta-G solvation = -129.209071 kcal Electronic energy + Delta-G solvation = -15666.117047 eV Core-core repulsion = 12734.621375 eV Total energy + Delta-G solvation = -2931.495673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.81590 -39.98854 -37.87779 -35.76238 -33.57080 -31.16555 -28.92102 -27.52019 -25.65123 -22.74178 -22.16576 -19.78671 -19.63139 -17.33805 -16.96977 -16.44036 -16.09177 -15.68405 -14.94245 -14.84837 -14.45970 -13.80456 -13.47744 -13.34846 -12.86901 -12.46872 -12.24992 -12.23382 -12.13218 -11.41163 -11.16070 -10.93588 -10.66164 -10.50971 -10.42969 -10.03876 -9.90731 -9.80218 -9.53541 -9.18160 -8.36571 -6.00432 -4.05501 2.84077 2.91485 3.25598 3.33646 3.38316 3.40460 3.79500 4.28263 4.37261 4.47412 4.69608 4.76500 5.28095 5.30377 5.34479 5.34884 5.45700 5.59742 5.70140 5.74398 5.82822 6.11494 6.13206 6.21428 6.66016 6.95851 7.67170 7.74523 7.99053 8.26729 8.42622 9.01425 9.58472 11.10602 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056908 B = 0.004445 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.904431 B = 6297.017754 C = 6442.926362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C 0.097 3.903 4 O -0.361 6.361 5 C 0.456 3.544 6 O -0.506 6.506 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.179 4.179 18 C 0.023 3.977 19 H 0.135 0.865 20 F -0.181 7.181 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.116 0.884 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -19.493 -4.031 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C 0.023 3.977 4 O -0.279 6.279 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.216 4.216 18 C -0.013 4.013 19 H 0.152 0.848 20 F -0.161 7.161 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.668 -19.251 -4.222 20.047 hybrid contribution -0.115 0.689 0.417 0.814 sum -3.783 -18.562 -3.805 19.322 Atomic orbital electron populations 1.21276 0.89923 1.03139 1.02749 1.22158 0.97066 0.90344 1.04047 1.22205 0.93634 0.85620 0.96221 1.86512 1.52246 1.21543 1.67590 1.24790 0.85156 0.81193 0.78861 1.90638 1.24487 1.79578 1.44504 1.21760 0.99683 0.93783 0.98749 1.19018 0.95802 0.87177 0.98446 1.21119 1.08225 0.94532 1.32870 0.92350 1.25018 0.95056 0.98515 0.95695 1.69984 1.20759 1.18724 1.43337 0.86598 0.80044 0.80470 0.80511 1.20154 1.21255 1.20167 1.23832 1.03485 1.00573 0.93734 1.22478 0.85335 1.01753 0.91746 0.84765 1.92808 1.46978 1.93761 1.82543 0.91633 0.92190 0.89969 0.90642 0.90657 0.88944 0.88955 0.95598 0.95585 0.92787 0.86584 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.75 37.15 0.36 -0.67 16 2 C -0.14 -1.44 2.59 -154.51 -0.40 -1.84 16 3 C 0.10 1.40 5.56 37.16 0.21 1.61 16 4 O -0.36 -6.06 8.79 -39.26 -0.34 -6.41 16 5 C 0.46 9.22 7.96 36.00 0.29 9.51 16 6 O -0.51 -11.87 15.73 -18.75 -0.29 -12.17 16 7 C -0.10 -2.12 5.75 -27.89 -0.16 -2.28 16 8 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 9 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 13 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.18 -1.45 9.96 -26.74 -0.27 -1.72 16 18 C 0.02 0.22 7.48 -26.73 -0.20 0.02 16 19 H 0.14 0.94 8.05 -51.93 -0.42 0.53 16 20 F -0.18 -2.38 16.50 2.25 0.04 -2.34 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 23 H 0.08 0.89 6.87 -51.93 -0.36 0.53 16 24 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 25 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -32.65 284.05 -5.78 -38.43 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.47 Total: -3.60 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.70 Total: -8.21 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.64 Total: -18.58 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.65 -5.78 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.775 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds