Wall clock time and date at job start Sun Mar 29 2020 22:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 115.55240 * 2 1 4 4 O 1.45208 * 109.46666 * 34.32965 * 3 2 1 5 5 C 1.34232 * 116.99618 * 180.02562 * 4 3 2 6 6 O 1.20826 * 120.00236 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00079 * 180.02562 * 5 4 3 8 8 C 1.52997 * 109.47466 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.52996 * 117.50165 * 214.32962 * 2 1 3 18 18 C 1.52994 * 60.00250 * 252.48593 * 17 2 1 19 19 H 1.09006 * 117.50058 * 107.48545 * 18 17 2 20 20 F 1.39897 * 117.50098 * 252.51187 * 18 17 2 21 21 H 1.08997 * 109.47372 * 85.57905 * 1 2 3 22 22 H 1.08993 * 109.47426 * 205.58436 * 1 2 3 23 23 H 1.09002 * 109.47305 * 325.58572 * 1 2 3 24 24 H 1.08998 * 109.47407 * 274.33498 * 3 2 1 25 25 H 1.08996 * 109.47314 * 154.32426 * 3 2 1 26 26 H 1.09002 * 109.47120 * 59.99588 * 7 5 4 27 27 H 1.08998 * 109.46862 * 300.00390 * 7 5 4 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 5 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 5 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.09004 * 117.49703 * 359.97427 * 17 2 1 32 32 H 1.09005 * 117.50336 * 144.99575 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3786 2.3046 0.7721 5 6 1.8213 3.5680 0.8708 6 8 2.8527 3.8908 0.3305 7 6 1.0325 4.5836 1.6566 8 6 1.7511 5.9335 1.6114 9 6 0.9619 6.9492 2.3967 10 1 0.0403 6.6606 2.8801 11 6 1.4171 8.2467 2.4989 12 7 2.5397 8.5980 1.9107 13 14 0.4393 9.5055 3.4729 14 1 0.3188 9.0555 4.8830 15 1 1.1367 10.8158 3.4289 16 1 -0.9153 9.6461 2.8808 17 6 2.2364 -1.1207 -0.7653 18 6 2.2369 -1.1209 0.7646 19 1 1.6119 -1.8586 1.2680 20 9 3.4371 -0.8052 1.4103 21 1 -0.3634 0.0792 -1.0246 22 1 -0.3634 -0.9268 0.4437 23 1 -0.3634 0.8478 0.5808 24 1 2.2766 1.7417 -1.0247 25 1 3.1822 1.3087 0.4452 26 1 0.9447 4.2536 2.6918 27 1 0.0380 4.6861 1.2225 28 1 1.8392 6.2637 0.5764 29 1 2.7454 5.8306 2.0459 30 1 2.8597 9.5109 1.9824 31 1 1.6112 -1.8583 -1.2685 32 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822152906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:32 Heat of formation + Delta-G solvation = -148.551365 kcal Electronic energy + Delta-G solvation = -15666.955792 eV Core-core repulsion = 12734.621375 eV Total energy + Delta-G solvation = -2932.334417 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.71400 -41.54051 -38.87442 -37.17616 -35.66048 -33.17789 -29.83803 -28.72319 -27.47064 -24.14849 -23.39523 -21.49431 -20.52981 -19.10833 -18.20032 -17.80600 -17.73619 -16.89383 -16.47526 -16.24295 -15.84584 -15.16134 -14.66244 -14.31135 -14.25255 -13.91138 -13.80540 -13.46026 -13.18021 -12.86378 -12.79399 -12.54935 -12.28278 -12.01762 -11.85723 -11.76948 -11.48553 -11.33275 -11.09157 -10.62778 -10.57208 -8.20035 -6.34360 1.20045 1.43273 1.48123 1.55109 1.60841 2.41640 2.45174 3.06091 3.13761 3.44050 3.54502 3.84815 3.99560 4.06015 4.25561 4.28428 4.44069 4.45784 4.74080 4.76860 4.90981 4.97838 5.01660 5.09265 5.30992 5.44267 5.46849 5.53391 5.79678 6.12217 6.75767 6.84844 7.36139 8.92618 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056908 B = 0.004445 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.904431 B = 6297.017754 C = 6442.926362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.153 4.153 3 C 0.091 3.909 4 O -0.347 6.347 5 C 0.463 3.537 6 O -0.547 6.547 7 C -0.092 4.092 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.079 0.921 11 C -0.004 4.004 12 N -0.937 5.937 13 Si 0.976 3.024 14 H -0.263 1.263 15 H -0.288 1.288 16 H -0.261 1.261 17 C -0.154 4.154 18 C 0.011 3.989 19 H 0.168 0.832 20 F -0.206 7.206 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.119 0.881 28 H -0.010 1.010 29 H -0.013 1.013 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -21.056 -3.539 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.154 4.154 3 C 0.017 3.983 4 O -0.263 6.263 5 C 0.309 3.691 6 O -0.437 6.437 7 C -0.129 4.129 8 C 0.000 4.000 9 C -0.583 4.583 10 H 0.097 0.903 11 C -0.202 4.202 12 N -0.577 5.577 13 Si 0.799 3.201 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.191 4.191 18 C -0.024 4.024 19 H 0.185 0.815 20 F -0.186 7.186 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.029 -20.856 -3.725 22.027 hybrid contribution 0.655 1.091 0.212 1.290 sum -5.374 -19.765 -3.513 20.782 Atomic orbital electron populations 1.21282 0.88408 1.03668 1.03330 1.22178 0.98106 0.88348 1.06750 1.22450 0.93197 0.87279 0.95407 1.86488 1.52034 1.20253 1.67566 1.24612 0.84236 0.82270 0.77994 1.90628 1.26265 1.80528 1.46319 1.21519 0.99889 0.90964 1.00571 1.18805 0.94716 0.90687 0.95768 1.21615 1.08896 0.95044 1.32759 0.90300 1.26118 0.96081 1.01207 0.96771 1.70160 1.22956 1.19362 1.45194 0.85342 0.78586 0.76957 0.79173 1.18724 1.21335 1.18591 1.23977 1.03222 0.99156 0.92761 1.23003 0.84579 1.01687 0.93157 0.81516 1.92758 1.48669 1.94010 1.83204 0.90629 0.89455 0.92059 0.90786 0.92544 0.86650 0.86254 0.99173 0.99432 0.92739 0.83047 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.75 71.98 0.70 -0.99 16 2 C -0.15 -2.96 2.59 -52.18 -0.14 -3.10 16 3 C 0.09 2.61 5.56 71.98 0.40 3.01 16 4 O -0.35 -11.55 8.79 -51.44 -0.45 -12.00 16 5 C 0.46 19.03 7.96 71.23 0.57 19.60 16 6 O -0.55 -26.88 15.73 21.97 0.35 -26.53 16 7 C -0.09 -3.79 5.75 29.85 0.17 -3.62 16 8 C 0.04 2.07 4.26 29.85 0.13 2.20 16 9 C -0.55 -30.73 9.11 25.60 0.23 -30.49 16 10 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 11 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 12 N -0.94 -58.89 13.29 21.45 0.28 -58.60 16 13 Si 0.98 43.86 29.54 68.60 2.03 45.88 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 17 C -0.15 -2.05 9.96 30.59 0.30 -1.75 16 18 C 0.01 0.19 7.48 30.59 0.23 0.42 16 19 H 0.17 1.72 8.05 -2.38 -0.02 1.70 16 20 F -0.21 -5.32 16.50 44.97 0.74 -4.57 16 21 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.09 0.86 7.90 -2.39 -0.02 0.85 16 23 H 0.06 1.20 6.87 -2.39 -0.02 1.18 16 24 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 25 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 26 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 28 H -0.01 -0.63 8.10 -2.39 -0.02 -0.64 16 29 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.15 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -73.51 284.05 7.11 -66.40 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.10 Total: 3.92 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.06 Total: -14.49 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.60 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.11 Total: -38.53 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.74 Total: -4.57 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -73.51 7.11 -66.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.149 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds