Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55129 * 2 1 4 4 O 1.45191 * 109.47174 * 34.41692 * 3 2 1 5 5 C 1.34232 * 117.00242 * 180.02562 * 4 3 2 6 6 O 1.20822 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52999 * 117.50110 * 214.32486 * 2 1 3 18 18 C 1.53001 * 117.49903 * 145.66615 * 2 1 3 19 19 H 1.09003 * 117.50364 * 215.00382 * 18 2 1 20 20 F 1.39906 * 117.49565 * 0.02912 * 18 2 1 21 21 H 1.09000 * 109.46390 * 85.58355 * 1 2 3 22 22 H 1.08993 * 109.47026 * 205.58009 * 1 2 3 23 23 H 1.08997 * 109.47051 * 325.58565 * 1 2 3 24 24 H 1.09000 * 109.46868 * 274.41147 * 3 2 1 25 25 H 1.09006 * 109.46936 * 154.41410 * 3 2 1 26 26 H 1.09000 * 109.47333 * 60.00278 * 7 5 4 27 27 H 1.09002 * 109.47152 * 299.99750 * 7 5 4 28 28 H 1.09001 * 109.47671 * 60.00215 * 8 7 5 29 29 H 1.09006 * 109.47297 * 299.99934 * 8 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 31 31 H 1.09004 * 117.49589 * 359.97438 * 17 2 1 32 32 H 1.09007 * 117.50149 * 144.97128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3799 2.3041 0.7737 5 6 1.8226 3.5674 0.8727 6 8 2.8532 3.8905 0.3311 7 6 1.0343 4.5827 1.6593 8 6 1.7523 5.9330 1.6130 9 6 0.9643 6.9482 2.4002 10 1 0.0432 6.6593 2.8846 11 6 1.4192 8.2457 2.5019 12 7 2.5405 8.5977 1.9116 13 14 0.4421 9.5042 3.4770 14 1 1.1396 10.8145 3.4332 15 1 -0.9132 9.6445 2.8863 16 1 0.3233 9.0541 4.8872 17 6 2.2365 -1.1208 -0.7652 18 6 2.2364 -1.1207 0.7655 19 1 3.1713 -0.8746 1.2690 20 9 1.4339 -2.0673 1.4113 21 1 -0.3632 0.0791 -1.0247 22 1 -0.3633 -0.9269 0.4437 23 1 -0.3633 0.8478 0.5808 24 1 2.2753 1.7423 -1.0246 25 1 3.1829 1.3084 0.4438 26 1 0.9471 4.2524 2.6944 27 1 0.0396 4.6856 1.2256 28 1 1.8391 6.2632 0.5779 29 1 2.7473 5.8305 2.0464 30 1 3.0477 7.9442 1.4050 31 1 1.6112 -1.8584 -1.2684 32 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822152918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = -133.748446 kcal Electronic energy + Delta-G solvation = -15611.519906 eV Core-core repulsion = 12679.827392 eV Total energy + Delta-G solvation = -2931.692515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.87302 -40.16701 -37.94521 -35.87731 -33.93109 -31.11170 -29.03226 -27.48425 -25.23124 -22.77510 -22.33995 -20.07921 -19.69083 -17.50387 -17.10212 -16.51578 -16.42091 -15.80144 -15.25975 -14.95501 -13.92856 -13.81008 -13.72297 -13.31511 -12.83348 -12.55114 -12.44117 -12.31821 -12.06737 -11.62599 -11.40691 -10.87196 -10.68991 -10.50156 -10.22489 -10.21116 -10.06069 -9.87890 -9.85726 -8.63713 -8.35177 -6.38550 -4.09684 2.67462 2.79472 3.18726 3.43747 3.45712 3.64566 3.74910 4.23821 4.33906 4.54435 4.60891 4.73941 5.13511 5.22789 5.26917 5.38070 5.39447 5.56770 5.65864 5.72706 5.77262 5.97856 6.03059 6.14259 6.48926 6.78488 7.37139 7.41864 8.06363 8.23741 8.42357 8.83892 9.63934 11.02395 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.060440 B = 0.004278 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.158041 B = 6544.178498 C = 6758.749786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C 0.102 3.898 4 O -0.359 6.359 5 C 0.457 3.543 6 O -0.509 6.509 7 C -0.096 4.096 8 C 0.020 3.980 9 C -0.610 4.610 10 H 0.052 0.948 11 C 0.017 3.983 12 N -0.909 5.909 13 Si 1.071 2.929 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.287 1.287 17 C -0.177 4.177 18 C 0.023 3.977 19 H 0.134 0.866 20 F -0.181 7.181 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -18.672 -3.962 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 C 0.027 3.973 4 O -0.277 6.277 5 C 0.301 3.699 6 O -0.396 6.396 7 C -0.134 4.134 8 C -0.017 4.017 9 C -0.648 4.648 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.544 5.544 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.214 4.214 18 C -0.013 4.013 19 H 0.151 0.849 20 F -0.161 7.161 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.205 -17.039 -3.646 17.563 hybrid contribution 0.156 -1.855 -0.586 1.952 sum -2.049 -18.894 -4.232 19.470 Atomic orbital electron populations 1.21245 0.90167 1.03535 1.02622 1.22151 0.97479 0.89911 1.04090 1.22287 0.93036 0.85646 0.96281 1.86545 1.52286 1.21438 1.67415 1.24783 0.85032 0.81293 0.78757 1.90626 1.24649 1.79651 1.44676 1.21614 0.99669 0.93129 0.98975 1.19140 0.95869 0.88934 0.97763 1.21976 1.10245 0.96596 1.36008 0.92931 1.25878 0.97154 0.98321 0.97409 1.70754 1.14179 1.38468 1.31041 0.83513 0.75051 0.75851 0.75653 1.20735 1.21367 1.21373 1.23859 1.03518 1.00353 0.93684 1.22476 0.95209 0.91852 0.91729 0.84888 1.92786 1.75292 1.65418 1.82589 0.91792 0.91773 0.90057 0.90376 0.91018 0.88714 0.88720 0.96494 0.96506 0.91800 0.87008 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.72 37.16 0.36 -0.89 16 2 C -0.14 -1.43 2.59 -154.51 -0.40 -1.83 16 3 C 0.10 1.30 5.59 37.16 0.21 1.51 16 4 O -0.36 -5.73 8.79 -39.26 -0.35 -6.07 16 5 C 0.46 8.83 7.96 36.00 0.29 9.12 16 6 O -0.51 -11.28 15.73 -18.75 -0.29 -11.57 16 7 C -0.10 -1.97 5.75 -27.89 -0.16 -2.13 16 8 C 0.02 0.53 3.57 -27.88 -0.10 0.43 16 9 C -0.61 -17.25 9.11 -34.44 -0.31 -17.56 16 10 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 11 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 12 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 13 Si 1.07 25.07 29.90 -169.99 -5.08 19.99 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 17 C -0.18 -1.41 9.96 -26.70 -0.27 -1.68 16 18 C 0.02 0.23 7.48 -26.69 -0.20 0.03 16 19 H 0.13 1.08 8.05 -51.93 -0.42 0.66 16 20 F -0.18 -2.11 16.50 2.25 0.04 -2.08 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.65 7.10 -51.93 -0.37 0.28 16 23 H 0.08 0.96 6.87 -51.93 -0.36 0.61 16 24 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 25 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 26 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 27 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 29 H 0.02 0.47 7.97 -51.93 -0.41 0.05 16 30 H 0.27 8.53 7.22 -40.82 -0.29 8.24 16 31 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.73 8.14 -51.92 -0.42 0.30 16 LS Contribution 282.74 15.07 4.26 4.26 Total: -1.00 -32.47 282.74 -5.76 -38.23 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.41 Total: -2.63 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.68 Total: -12.62 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.76 Total: -27.51 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.64 Total: -17.65 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.47 -5.76 -38.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.519 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds