Wall clock time and date at job start Sun Mar 29 2020 22:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55129 * 2 1 4 4 O 1.45191 * 109.47174 * 34.41692 * 3 2 1 5 5 C 1.34232 * 117.00242 * 180.02562 * 4 3 2 6 6 O 1.20822 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52999 * 117.50110 * 214.32486 * 2 1 3 18 18 C 1.53001 * 117.49903 * 145.66615 * 2 1 3 19 19 H 1.09003 * 117.50364 * 215.00382 * 18 2 1 20 20 F 1.39906 * 117.49565 * 0.02912 * 18 2 1 21 21 H 1.09000 * 109.46390 * 85.58355 * 1 2 3 22 22 H 1.08993 * 109.47026 * 205.58009 * 1 2 3 23 23 H 1.08997 * 109.47051 * 325.58565 * 1 2 3 24 24 H 1.09000 * 109.46868 * 274.41147 * 3 2 1 25 25 H 1.09006 * 109.46936 * 154.41410 * 3 2 1 26 26 H 1.09000 * 109.47333 * 60.00278 * 7 5 4 27 27 H 1.09002 * 109.47152 * 299.99750 * 7 5 4 28 28 H 1.09001 * 109.47671 * 60.00215 * 8 7 5 29 29 H 1.09006 * 109.47297 * 299.99934 * 8 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 31 31 H 1.09004 * 117.49589 * 359.97438 * 17 2 1 32 32 H 1.09007 * 117.50149 * 144.97128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3799 2.3041 0.7737 5 6 1.8226 3.5674 0.8727 6 8 2.8532 3.8905 0.3311 7 6 1.0343 4.5827 1.6593 8 6 1.7523 5.9330 1.6130 9 6 0.9643 6.9482 2.4002 10 1 0.0432 6.6593 2.8846 11 6 1.4192 8.2457 2.5019 12 7 2.5405 8.5977 1.9116 13 14 0.4421 9.5042 3.4770 14 1 1.1396 10.8145 3.4332 15 1 -0.9132 9.6445 2.8863 16 1 0.3233 9.0541 4.8872 17 6 2.2365 -1.1208 -0.7652 18 6 2.2364 -1.1207 0.7655 19 1 3.1713 -0.8746 1.2690 20 9 1.4339 -2.0673 1.4113 21 1 -0.3632 0.0791 -1.0247 22 1 -0.3633 -0.9269 0.4437 23 1 -0.3633 0.8478 0.5808 24 1 2.2753 1.7423 -1.0246 25 1 3.1829 1.3084 0.4438 26 1 0.9471 4.2524 2.6944 27 1 0.0396 4.6856 1.2256 28 1 1.8391 6.2632 0.5779 29 1 2.7473 5.8305 2.0464 30 1 3.0477 7.9442 1.4050 31 1 1.6112 -1.8584 -1.2684 32 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822152918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:35 Heat of formation + Delta-G solvation = -152.413846 kcal Electronic energy + Delta-G solvation = -15612.329299 eV Core-core repulsion = 12679.827392 eV Total energy + Delta-G solvation = -2932.501907 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.69815 -41.62300 -38.94043 -37.20351 -36.01691 -33.06856 -29.91133 -28.68753 -27.09176 -24.31561 -23.46308 -21.69049 -20.55361 -19.26290 -18.36727 -17.98540 -17.81993 -16.98684 -16.42681 -15.82670 -15.61061 -15.34706 -15.05378 -14.60185 -14.17774 -13.92696 -13.69859 -13.50917 -13.26799 -13.08714 -12.69273 -12.36923 -12.15296 -12.11278 -11.92039 -11.87641 -11.62399 -11.18891 -10.77436 -10.66763 -10.55754 -8.70582 -6.43066 1.12484 1.52174 1.58017 1.65595 1.84294 2.38589 2.59960 2.98568 3.16008 3.45379 3.47247 3.77009 3.92515 4.00589 4.21163 4.24547 4.30464 4.33981 4.65146 4.72763 4.78903 4.84806 4.91793 5.05261 5.18858 5.26377 5.28646 5.35558 5.89582 6.16058 6.48965 6.72068 7.41890 8.69884 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.060440 B = 0.004278 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.158041 B = 6544.178498 C = 6758.749786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.152 4.152 3 C 0.096 3.904 4 O -0.350 6.350 5 C 0.468 3.532 6 O -0.544 6.544 7 C -0.089 4.089 8 C 0.023 3.977 9 C -0.621 4.621 10 H 0.068 0.932 11 C -0.041 4.041 12 N -0.938 5.938 13 Si 1.124 2.876 14 H -0.288 1.288 15 H -0.264 1.264 16 H -0.265 1.265 17 C -0.150 4.150 18 C 0.013 3.987 19 H 0.148 0.852 20 F -0.194 7.194 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.115 0.885 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.253 0.747 31 H 0.124 0.876 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -19.867 -3.665 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.023 3.977 4 O -0.267 6.267 5 C 0.313 3.687 6 O -0.434 6.434 7 C -0.127 4.127 8 C -0.015 4.015 9 C -0.658 4.658 10 H 0.086 0.914 11 C -0.238 4.238 12 N -0.575 5.575 13 Si 0.944 3.056 14 H -0.213 1.213 15 H -0.189 1.189 16 H -0.190 1.190 17 C -0.187 4.187 18 C -0.023 4.023 19 H 0.165 0.835 20 F -0.174 7.174 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.467 -18.291 -3.352 18.916 hybrid contribution 0.555 -1.597 -0.719 1.837 sum -2.912 -19.888 -4.070 20.508 Atomic orbital electron populations 1.21220 0.90346 1.02874 1.03051 1.22115 0.97442 0.89061 1.06693 1.22595 0.93245 0.85982 0.95901 1.86509 1.52429 1.20224 1.67544 1.24376 0.84104 0.82262 0.77949 1.90621 1.26101 1.80510 1.46195 1.21369 0.99799 0.90735 1.00752 1.18972 0.94990 0.92106 0.95399 1.22447 1.10710 0.97134 1.35554 0.91354 1.27605 0.97190 1.01356 0.97660 1.70907 1.15736 1.38096 1.32801 0.82870 0.74413 0.72934 0.75420 1.21330 1.18916 1.18966 1.23988 1.03910 0.98233 0.92543 1.22750 0.95198 0.91152 0.93168 0.83494 1.92760 1.75777 1.65834 1.83029 0.90713 0.91542 0.91740 0.90156 0.90464 0.86762 0.86663 0.99395 0.99441 0.93773 0.85755 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.72 71.98 0.70 -1.60 16 2 C -0.15 -2.90 2.59 -52.18 -0.13 -3.04 16 3 C 0.10 2.33 5.59 71.98 0.40 2.73 16 4 O -0.35 -10.78 8.79 -51.43 -0.45 -11.24 16 5 C 0.47 17.90 7.96 71.23 0.57 18.47 16 6 O -0.54 -24.48 15.73 21.98 0.35 -24.13 16 7 C -0.09 -3.58 5.75 29.85 0.17 -3.41 16 8 C 0.02 1.21 3.57 29.85 0.11 1.31 16 9 C -0.62 -34.98 9.11 25.60 0.23 -34.75 16 10 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 11 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 12 N -0.94 -59.76 13.65 21.45 0.29 -59.47 16 13 Si 1.12 49.46 29.90 68.60 2.05 51.51 16 14 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 17 C -0.15 -1.94 9.96 30.62 0.30 -1.63 16 18 C 0.01 0.22 7.48 30.62 0.23 0.45 16 19 H 0.15 2.07 8.05 -2.39 -0.02 2.05 16 20 F -0.19 -4.20 16.50 44.97 0.74 -3.46 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.25 7.10 -2.39 -0.02 1.24 16 23 H 0.06 1.46 6.87 -2.39 -0.02 1.44 16 24 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.08 1.79 7.89 -2.38 -0.02 1.77 16 26 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 27 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 28 H -0.01 -0.72 7.97 -2.39 -0.02 -0.74 16 29 H -0.01 -0.75 7.97 -2.38 -0.02 -0.77 16 30 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 31 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -70.93 282.74 7.22 -63.71 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.20 Total: 6.47 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.04 Total: -23.39 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.29 Total: -59.47 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.11 Total: -35.37 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.74 Total: -3.46 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -70.93 7.22 -63.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.707 kcal (2) G-P(sol) polarization free energy of solvation -70.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds