Wall clock time and date at job start Sun Mar 29 2020 22:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.54950 * 2 1 4 4 O 1.45199 * 109.47075 * 325.67288 * 3 2 1 5 5 C 1.34230 * 116.99614 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00258 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00172 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99838 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00094 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47197 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47002 * 120.00365 * 13 11 9 16 16 H 1.48497 * 109.46906 * 239.99781 * 13 11 9 17 17 C 1.52994 * 117.49816 * 145.67339 * 2 1 3 18 18 C 1.52998 * 60.00131 * 107.50697 * 17 2 1 19 19 H 1.08994 * 117.50279 * 252.50710 * 18 17 2 20 20 F 1.39903 * 117.49907 * 107.48391 * 18 17 2 21 21 H 1.08991 * 109.47219 * 34.41040 * 1 2 3 22 22 H 1.08999 * 109.47158 * 154.41604 * 1 2 3 23 23 H 1.09003 * 109.46878 * 274.41548 * 1 2 3 24 24 H 1.09002 * 109.47153 * 205.67229 * 3 2 1 25 25 H 1.09001 * 109.46832 * 85.67420 * 3 2 1 26 26 H 1.09000 * 109.47303 * 300.00327 * 7 5 4 27 27 H 1.09003 * 109.46535 * 60.00663 * 7 5 4 28 28 H 1.09000 * 109.47151 * 300.00236 * 8 7 5 29 29 H 1.09003 * 109.46860 * 60.00013 * 8 7 5 30 30 H 0.96999 * 120.00252 * 179.97438 * 12 11 9 31 31 H 1.09000 * 117.49792 * 214.99589 * 17 2 1 32 32 H 1.09002 * 117.50456 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3046 -0.7720 5 6 1.8214 3.5680 -0.8707 6 8 2.8527 3.8907 -0.3303 7 6 1.0325 4.5836 -1.6564 8 6 1.7511 5.9336 -1.6112 9 6 0.9619 6.9493 -2.3964 10 1 0.0398 6.6609 -2.8791 11 6 1.4165 8.2470 -2.4977 12 7 2.5385 8.5985 -1.9087 13 14 0.4379 9.5062 -3.4704 14 1 -0.7782 8.8633 -4.0298 15 1 0.0400 10.6226 -2.5756 16 1 1.2737 10.0340 -4.5786 17 6 2.2365 -1.1207 0.7653 18 6 2.2368 -1.1210 -0.7647 19 1 1.6119 -1.8586 -1.2681 20 9 3.4371 -0.8053 -1.4104 21 1 -0.3633 0.8478 -0.5807 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0791 1.0247 24 1 3.1823 1.3087 -0.4452 25 1 2.2767 1.7416 1.0248 26 1 0.9446 4.2536 -2.6916 27 1 0.0380 4.6862 -1.2221 28 1 1.8393 6.2637 -0.5761 29 1 2.7454 5.8306 -2.0457 30 1 2.8586 9.5114 -1.9802 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822152921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:37 Heat of formation + Delta-G solvation = -129.294002 kcal Electronic energy + Delta-G solvation = -15666.247725 eV Core-core repulsion = 12734.748369 eV Total energy + Delta-G solvation = -2931.499356 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.81500 -39.98972 -37.87815 -35.76343 -33.57360 -31.16682 -28.92103 -27.52080 -25.65428 -22.74257 -22.16891 -19.78870 -19.63166 -17.33905 -16.97016 -16.44101 -16.09681 -15.68516 -14.94354 -14.84904 -14.45346 -13.80534 -13.47823 -13.34860 -12.86977 -12.47296 -12.25074 -12.24059 -12.13271 -11.41260 -11.15510 -10.97364 -10.62336 -10.51018 -10.42935 -10.05094 -9.90546 -9.80266 -9.54178 -9.15563 -8.37502 -6.00974 -4.05860 2.84027 2.91458 3.25589 3.31335 3.38746 3.42445 3.79485 4.28277 4.37195 4.47228 4.69573 4.76500 5.28063 5.30365 5.34427 5.34601 5.45642 5.59694 5.70103 5.74368 5.82803 6.11487 6.13152 6.21368 6.65935 6.95773 7.67492 7.74270 7.98781 8.26539 8.42524 9.01549 9.58290 11.10155 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056915 B = 0.004445 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.847912 B = 6297.108788 C = 6443.091220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C 0.097 3.903 4 O -0.361 6.361 5 C 0.456 3.544 6 O -0.506 6.506 7 C -0.102 4.102 8 C 0.032 3.968 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.179 4.179 18 C 0.023 3.977 19 H 0.135 0.865 20 F -0.181 7.181 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.108 0.892 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -19.521 4.023 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C 0.023 3.977 4 O -0.279 6.279 5 C 0.300 3.700 6 O -0.392 6.392 7 C -0.140 4.140 8 C -0.005 4.005 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.216 4.216 18 C -0.013 4.013 19 H 0.152 0.848 20 F -0.161 7.161 21 H 0.100 0.900 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.694 -19.286 4.213 20.084 hybrid contribution -0.094 0.704 -0.407 0.818 sum -3.788 -18.583 3.806 19.343 Atomic orbital electron populations 1.21279 0.89921 1.03137 1.02748 1.22159 0.97068 0.90344 1.04044 1.22202 0.93635 0.85621 0.96224 1.86510 1.52244 1.21541 1.67590 1.24793 0.85156 0.81194 0.78861 1.90637 1.24486 1.79581 1.44502 1.21762 0.99678 0.93775 0.98752 1.19029 0.95821 0.87204 0.98465 1.21194 1.08196 0.94483 1.32718 0.92240 1.25023 0.95069 0.98537 0.95705 1.70004 1.20844 1.18559 1.43396 0.86486 0.80062 0.81351 0.79786 1.19640 1.20973 1.20961 1.23831 1.03486 1.00572 0.93734 1.22478 0.85335 1.01755 0.91745 0.84765 1.92810 1.46979 1.93762 1.82541 0.89969 0.92190 0.91634 0.90658 0.90644 0.88940 0.88953 0.95587 0.95574 0.92901 0.87384 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.75 37.16 0.36 -0.67 16 2 C -0.14 -1.44 2.59 -154.51 -0.40 -1.84 16 3 C 0.10 1.40 5.56 37.16 0.21 1.61 16 4 O -0.36 -6.06 8.79 -39.26 -0.34 -6.41 16 5 C 0.46 9.22 7.96 36.01 0.29 9.50 16 6 O -0.51 -11.87 15.73 -18.75 -0.29 -12.16 16 7 C -0.10 -2.11 5.75 -27.88 -0.16 -2.27 16 8 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 9 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 13 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.18 -1.45 9.96 -26.74 -0.27 -1.72 16 18 C 0.02 0.22 7.48 -26.73 -0.20 0.02 16 19 H 0.14 0.94 8.05 -51.93 -0.42 0.53 16 20 F -0.18 -2.38 16.50 2.25 0.04 -2.34 16 21 H 0.08 0.89 6.87 -51.93 -0.36 0.53 16 22 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 25 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -32.70 284.05 -5.78 -38.48 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.47 Total: -3.67 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.70 Total: -8.21 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.64 Total: -18.57 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.70 -5.78 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.810 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds