Wall clock time and date at job start Sun Mar 29 2020 22:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.54950 * 2 1 4 4 O 1.45199 * 109.47075 * 325.67288 * 3 2 1 5 5 C 1.34230 * 116.99614 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00258 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00172 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99838 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00094 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47197 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47002 * 120.00365 * 13 11 9 16 16 H 1.48497 * 109.46906 * 239.99781 * 13 11 9 17 17 C 1.52994 * 117.49816 * 145.67339 * 2 1 3 18 18 C 1.52998 * 60.00131 * 107.50697 * 17 2 1 19 19 H 1.08994 * 117.50279 * 252.50710 * 18 17 2 20 20 F 1.39903 * 117.49907 * 107.48391 * 18 17 2 21 21 H 1.08991 * 109.47219 * 34.41040 * 1 2 3 22 22 H 1.08999 * 109.47158 * 154.41604 * 1 2 3 23 23 H 1.09003 * 109.46878 * 274.41548 * 1 2 3 24 24 H 1.09002 * 109.47153 * 205.67229 * 3 2 1 25 25 H 1.09001 * 109.46832 * 85.67420 * 3 2 1 26 26 H 1.09000 * 109.47303 * 300.00327 * 7 5 4 27 27 H 1.09003 * 109.46535 * 60.00663 * 7 5 4 28 28 H 1.09000 * 109.47151 * 300.00236 * 8 7 5 29 29 H 1.09003 * 109.46860 * 60.00013 * 8 7 5 30 30 H 0.96999 * 120.00252 * 179.97438 * 12 11 9 31 31 H 1.09000 * 117.49792 * 214.99589 * 17 2 1 32 32 H 1.09002 * 117.50456 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3046 -0.7720 5 6 1.8214 3.5680 -0.8707 6 8 2.8527 3.8907 -0.3303 7 6 1.0325 4.5836 -1.6564 8 6 1.7511 5.9336 -1.6112 9 6 0.9619 6.9493 -2.3964 10 1 0.0398 6.6609 -2.8791 11 6 1.4165 8.2470 -2.4977 12 7 2.5385 8.5985 -1.9087 13 14 0.4379 9.5062 -3.4704 14 1 -0.7782 8.8633 -4.0298 15 1 0.0400 10.6226 -2.5756 16 1 1.2737 10.0340 -4.5786 17 6 2.2365 -1.1207 0.7653 18 6 2.2368 -1.1210 -0.7647 19 1 1.6119 -1.8586 -1.2681 20 9 3.4371 -0.8053 -1.4104 21 1 -0.3633 0.8478 -0.5807 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0791 1.0247 24 1 3.1823 1.3087 -0.4452 25 1 2.2767 1.7416 1.0248 26 1 0.9446 4.2536 -2.6916 27 1 0.0380 4.6862 -1.2221 28 1 1.8393 6.2637 -0.5761 29 1 2.7454 5.8306 -2.0457 30 1 2.8586 9.5114 -1.9802 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822152921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:37 Heat of formation + Delta-G solvation = -148.674941 kcal Electronic energy + Delta-G solvation = -15667.088145 eV Core-core repulsion = 12734.748369 eV Total energy + Delta-G solvation = -2932.339776 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.71269 -41.54081 -38.87434 -37.17641 -35.66310 -33.17852 -29.83805 -28.72354 -27.47323 -24.15135 -23.39556 -21.49514 -20.52965 -19.11054 -18.20396 -17.80600 -17.73837 -16.89421 -16.46906 -16.24406 -15.84527 -15.16162 -14.66613 -14.30969 -14.26608 -13.91179 -13.80362 -13.45918 -13.17506 -12.86755 -12.85771 -12.48925 -12.28085 -12.03645 -11.85950 -11.76327 -11.48452 -11.29802 -11.08931 -10.62839 -10.59293 -8.20568 -6.34662 1.20089 1.43332 1.44824 1.57144 1.61496 2.41458 2.45013 3.06118 3.13503 3.44074 3.54552 3.84817 3.99573 4.06052 4.25578 4.28436 4.44106 4.45789 4.74110 4.76881 4.90979 4.97846 5.01701 5.09289 5.31042 5.44378 5.47052 5.53282 5.79723 6.12094 6.75874 6.84985 7.35943 8.92547 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.056915 B = 0.004445 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.847912 B = 6297.108788 C = 6443.091220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.153 4.153 3 C 0.091 3.909 4 O -0.347 6.347 5 C 0.463 3.537 6 O -0.547 6.547 7 C -0.092 4.092 8 C 0.037 3.963 9 C -0.543 4.543 10 H 0.079 0.921 11 C -0.005 4.005 12 N -0.937 5.937 13 Si 0.976 3.024 14 H -0.252 1.252 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.154 4.154 18 C 0.011 3.989 19 H 0.168 0.832 20 F -0.206 7.206 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.119 0.881 28 H -0.010 1.010 29 H -0.013 1.013 30 H 0.264 0.736 31 H 0.103 0.897 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -21.092 3.536 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.154 4.154 3 C 0.017 3.983 4 O -0.263 6.263 5 C 0.309 3.691 6 O -0.437 6.437 7 C -0.129 4.129 8 C 0.000 4.000 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.202 4.202 12 N -0.577 5.577 13 Si 0.800 3.200 14 H -0.176 1.176 15 H -0.206 1.206 16 H -0.207 1.207 17 C -0.191 4.191 18 C -0.024 4.024 19 H 0.185 0.815 20 F -0.186 7.186 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.046 -20.897 3.722 22.070 hybrid contribution 0.675 1.109 -0.203 1.314 sum -5.370 -19.787 3.519 20.803 Atomic orbital electron populations 1.21285 0.88406 1.03667 1.03329 1.22178 0.98109 0.88349 1.06745 1.22447 0.93197 0.87280 0.95410 1.86486 1.52032 1.20252 1.67566 1.24614 0.84235 0.82270 0.77992 1.90628 1.26266 1.80530 1.46318 1.21522 0.99884 0.90957 1.00574 1.18816 0.94734 0.90706 0.95786 1.21673 1.08822 0.94992 1.32600 0.90289 1.26119 0.96100 1.01224 0.96786 1.70170 1.23028 1.19291 1.45227 0.85238 0.78818 0.78064 0.77914 1.17562 1.20567 1.20663 1.23976 1.03223 0.99156 0.92761 1.23002 0.84580 1.01689 0.93156 0.81518 1.92760 1.48670 1.94012 1.83203 0.92058 0.89456 0.90629 0.92546 0.90787 0.86645 0.86254 0.99157 0.99412 0.92744 0.87843 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.75 71.98 0.70 -0.99 16 2 C -0.15 -2.96 2.59 -52.18 -0.14 -3.09 16 3 C 0.09 2.60 5.56 71.98 0.40 3.01 16 4 O -0.35 -11.54 8.79 -51.42 -0.45 -11.99 16 5 C 0.46 19.02 7.96 71.24 0.57 19.58 16 6 O -0.55 -26.86 15.73 21.97 0.35 -26.52 16 7 C -0.09 -3.79 5.75 29.85 0.17 -3.61 16 8 C 0.04 2.03 4.26 29.85 0.13 2.16 16 9 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 10 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 11 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 12 N -0.94 -58.87 13.29 21.45 0.28 -58.59 16 13 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 14 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C -0.15 -2.05 9.96 30.59 0.30 -1.75 16 18 C 0.01 0.19 7.48 30.59 0.23 0.42 16 19 H 0.17 1.72 8.05 -2.39 -0.02 1.70 16 20 F -0.21 -5.31 16.50 44.97 0.74 -4.57 16 21 H 0.06 1.20 6.87 -2.39 -0.02 1.18 16 22 H 0.09 0.86 7.90 -2.39 -0.02 0.84 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 25 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 26 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 28 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 29 H -0.01 -0.78 8.10 -2.39 -0.02 -0.80 16 30 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.57 284.05 7.11 -66.46 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.10 Total: 3.71 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.06 Total: -14.43 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.28 Total: -58.59 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.11 Total: -38.51 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.74 Total: -4.57 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.57 7.11 -66.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822152921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.213 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds