Wall clock time and date at job start Sun Mar 29 2020 21:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48498 * 109.46804 * 149.99708 * 3 2 1 7 7 C 1.37880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00453 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99453 * 359.72930 * 11 10 9 13 13 C 1.47520 * 119.99967 * 179.72956 * 11 10 9 14 14 C 1.36787 * 126.92312 * 180.02562 * 13 11 10 15 15 C 1.41415 * 103.83008 * 179.97438 * 14 13 11 16 16 Cl 1.73597 * 126.71945 * 179.97438 * 15 14 13 17 17 N 1.30219 * 106.55231 * 359.97438 * 15 14 13 18 18 O 1.20885 * 111.96156 * 359.72391 * 17 15 14 19 19 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.46606 * 60.00483 * 9 7 2 21 21 H 1.09006 * 109.47204 * 300.00940 * 9 7 2 22 22 H 0.97000 * 120.00740 * 359.72841 * 10 9 7 23 23 H 1.07993 * 128.08765 * 359.96782 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1150 -1.8972 -0.0049 13 6 5.8168 -4.2122 0.0063 14 6 7.1217 -4.6224 0.0076 15 6 7.0324 -6.0337 0.0147 16 17 8.3556 -7.1575 0.0190 17 7 5.7633 -6.3251 0.0174 18 8 5.0717 -5.3336 0.0186 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6796 0.8896 21 1 3.8746 -0.6806 -0.8905 22 1 3.3697 -3.3125 0.0045 23 1 8.0121 -4.0114 0.0040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822501846.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:59 Heat of formation + Delta-G solvation = 0.135695 kcal Electronic energy + Delta-G solvation = -13165.159503 eV Core-core repulsion = 10428.235577 eV Total energy + Delta-G solvation = -2736.923925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.36038 -40.68778 -38.27826 -36.40660 -34.93008 -34.48063 -33.29400 -30.08605 -25.84088 -24.79821 -23.69120 -22.01691 -20.41037 -19.15319 -18.62391 -17.47824 -17.17920 -16.49622 -16.30001 -15.90288 -14.95215 -14.89642 -14.38409 -14.22152 -13.88359 -13.61506 -13.08284 -12.68387 -12.23766 -11.89832 -11.66441 -11.51948 -11.24992 -11.06814 -10.89817 -10.12550 -8.36479 -6.45206 -0.49373 0.23670 0.59899 1.33876 1.39190 1.42030 1.52534 1.82050 2.21198 2.32182 2.99282 3.03032 3.50747 3.76209 3.80290 4.55204 4.74058 5.01721 5.19044 5.28644 6.01944 6.41402 6.56924 6.70386 6.93299 7.21917 8.78273 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.074411 B = 0.005120 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.199251 B = 5467.308768 C = 5828.351503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.552 4.552 8 H 0.059 0.941 9 C 0.228 3.772 10 N -0.684 5.684 11 C 0.597 3.403 12 O -0.549 6.549 13 C -0.064 4.064 14 C -0.127 4.127 15 C 0.053 3.947 16 Cl 0.051 6.949 17 N -0.343 5.343 18 O 0.133 5.867 19 H 0.272 0.728 20 H 0.029 0.971 21 H 0.028 0.972 22 H 0.414 0.586 23 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.366 -10.312 0.046 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.105 3.895 10 N -0.332 5.332 11 C 0.380 3.620 12 O -0.429 6.429 13 C -0.130 4.130 14 C -0.150 4.150 15 C -0.130 4.130 16 Cl 0.079 6.921 17 N -0.045 5.045 18 O 0.057 5.943 19 H 0.082 0.918 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.250 0.750 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 15.185 -10.784 0.046 18.625 hybrid contribution 0.211 0.735 -0.016 0.765 sum 15.396 -10.049 0.030 18.386 Atomic orbital electron populations 1.69985 1.07942 1.28712 1.50478 1.25619 0.95504 1.02829 0.93414 0.85840 0.79511 0.78921 0.79558 1.18902 1.20273 1.17479 1.21275 0.89926 0.94705 1.53093 0.92318 1.19352 0.93549 0.79398 0.97155 1.46023 1.05705 1.11225 1.70239 1.16662 0.83092 0.84368 0.77896 1.90834 1.56174 1.43169 1.52704 1.24044 0.91738 0.88908 1.08284 1.23007 0.98439 0.91972 1.01607 1.24219 0.89997 0.91578 1.07255 1.98428 1.38205 1.58682 1.96805 1.73848 1.04439 1.08873 1.17348 1.85083 1.32766 1.09661 1.66791 0.91838 0.95278 0.95399 0.74956 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.96 21.45 0.30 -54.12 14 2 C 0.03 1.45 5.47 84.66 0.46 1.92 14 3 Si 0.94 41.56 27.47 68.60 1.88 43.44 14 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 14 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 14 6 H -0.25 -10.67 6.54 99.48 0.65 -10.01 14 7 C -0.55 -29.10 9.83 25.60 0.25 -28.84 14 8 H 0.06 3.29 7.84 -2.91 -0.02 3.27 14 9 C 0.23 10.28 4.50 85.63 0.38 10.67 14 10 N -0.68 -25.52 5.55 -470.02 -2.61 -28.12 14 11 C 0.60 20.48 7.82 86.69 0.68 21.15 14 12 O -0.55 -21.67 16.91 -3.98 -0.07 -21.74 14 13 C -0.06 -1.76 7.29 24.38 0.18 -1.58 14 14 C -0.13 -2.88 10.96 22.71 0.25 -2.63 14 15 C 0.05 1.20 7.97 85.71 0.68 1.88 14 16 Cl 0.05 0.91 29.33 -2.72 -0.08 0.83 14 17 N -0.34 -9.08 12.05 -51.03 -0.61 -9.69 14 18 O 0.13 3.60 11.04 65.84 0.73 4.32 14 19 H 0.27 14.82 8.31 -92.71 -0.77 14.05 14 20 H 0.03 1.35 7.20 -2.38 -0.02 1.33 14 21 H 0.03 1.28 7.57 -2.38 -0.02 1.26 14 22 H 0.41 14.01 8.15 -92.71 -0.76 13.25 14 23 H 0.22 3.78 8.06 -2.91 -0.02 3.75 14 Total: -1.00 -60.40 238.01 2.89 -57.51 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.46 Total: 5.02 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 2.89 Total: 2.56 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -2.92 Total: -91.94 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.66 Total: -17.42 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -60.40 2.89 -57.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822501846.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.645 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds