Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47187 * 269.99669 * 3 2 1 5 5 H 1.48497 * 109.47325 * 29.99974 * 3 2 1 6 6 H 1.48502 * 109.47336 * 149.99822 * 3 2 1 7 7 C 1.37877 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99615 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00345 * 180.02562 * 7 2 1 10 10 S 1.81400 * 109.47214 * 180.02562 * 9 7 2 11 11 C 1.76194 * 103.00272 * 179.97438 * 10 9 7 12 12 C 1.39354 * 120.09388 * 180.02562 * 11 10 9 13 13 N 1.31920 * 119.92446 * 179.97438 * 12 11 10 14 14 C 1.32264 * 120.10426 * 359.97438 * 13 12 11 15 15 C 1.38340 * 120.18709 * 0.02562 * 14 13 12 16 16 Cl 1.73601 * 119.96197 * 180.02562 * 15 14 13 17 17 N 1.32334 * 120.07746 * 359.97438 * 15 14 13 18 18 H 0.97008 * 119.99797 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47199 * 59.99448 * 9 7 2 20 20 H 1.09003 * 109.46665 * 299.99361 * 9 7 2 21 21 H 1.08003 * 120.04016 * 359.97438 * 12 11 10 22 22 H 1.08006 * 119.90421 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9043 -0.0016 11 6 5.8669 -2.7058 -0.0015 12 6 6.6970 -3.8251 -0.0031 13 7 8.0074 -3.6726 -0.0036 14 6 8.5341 -2.4594 -0.0029 15 6 7.7142 -1.3451 -0.0013 16 17 8.4117 0.2446 -0.0011 17 7 6.3987 -1.4896 -0.0009 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6807 0.8905 20 1 3.8751 -0.6797 -0.8895 21 1 6.2681 -4.8163 -0.0041 22 1 9.6073 -2.3383 -0.0028 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840353456.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = 12.518967 kcal Electronic energy + Delta-G solvation = -11163.582810 eV Core-core repulsion = 8869.948735 eV Total energy + Delta-G solvation = -2293.634075 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.998 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.05430 -37.94371 -35.55059 -35.24087 -32.49384 -31.54078 -26.15329 -25.81006 -24.47807 -19.61573 -19.06502 -18.80237 -17.91487 -16.80144 -16.45698 -16.20133 -15.39263 -14.78662 -14.52100 -14.11125 -13.38843 -12.96541 -12.84237 -12.74725 -12.59829 -12.47142 -12.25246 -11.86811 -11.30309 -10.95520 -10.76162 -10.40265 -8.68602 -8.43909 -6.54267 -0.58892 -0.22889 0.37048 0.49956 1.29366 1.31016 1.42567 1.48331 2.24323 2.31983 2.89815 3.10658 3.17109 3.44953 3.88471 4.21643 4.62744 4.66146 4.96060 5.23222 5.80988 5.97290 6.37904 6.49391 7.09972 8.70760 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.008609 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.850186 B = 3251.802245 C = 4168.508591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.033 3.967 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.035 3.965 10 S -0.036 6.036 11 C 0.072 3.928 12 C 0.079 3.921 13 N -0.410 5.410 14 C 0.062 3.938 15 C 0.130 3.870 16 Cl -0.008 7.008 17 N -0.477 5.477 18 H 0.275 0.725 19 H 0.043 0.957 20 H 0.041 0.959 21 H 0.208 0.792 22 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.475 -3.004 0.004 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.169 4.169 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.575 4.575 8 H 0.069 0.931 9 C -0.113 4.113 10 S 0.207 5.793 11 C -0.179 4.179 12 C -0.089 4.089 13 N -0.124 5.124 14 C -0.101 4.101 15 C -0.041 4.041 16 Cl 0.021 6.979 17 N -0.199 5.199 18 H 0.084 0.916 19 H 0.061 0.939 20 H 0.059 0.941 21 H 0.225 0.775 22 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 17.596 -3.729 0.006 17.987 hybrid contribution 0.408 2.261 -0.015 2.298 sum 18.004 -1.468 -0.009 18.064 Atomic orbital electron populations 1.69973 1.07867 1.28839 1.50090 1.25670 0.95508 1.02568 0.93147 0.85807 0.79469 0.78846 0.79625 1.18829 1.19792 1.17743 1.20612 0.88671 0.94452 1.53729 0.93054 1.21338 0.98233 0.91294 1.00452 1.85450 0.90403 1.15158 1.88299 1.24781 1.01923 0.91527 0.99630 1.23868 0.88728 0.99866 0.96450 1.68673 1.12093 1.23671 1.07988 1.23992 1.03008 0.85572 0.97556 1.23178 0.90613 0.90283 1.00076 1.98417 1.80762 1.22532 1.96233 1.68236 1.13349 1.25180 1.13130 0.91611 0.93877 0.94066 0.77512 0.76703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.96 21.45 0.30 -55.83 14 2 C 0.03 1.87 5.47 84.66 0.46 2.33 14 3 Si 0.94 43.54 27.47 68.60 1.88 45.42 14 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 14 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 14 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 14 7 C -0.54 -30.31 9.68 25.60 0.25 -30.06 14 8 H 0.05 3.17 7.96 -2.91 -0.02 3.14 14 9 C 0.04 1.70 4.05 71.24 0.29 1.99 14 10 S -0.04 -1.41 21.85 -56.49 -1.23 -2.64 14 11 C 0.07 2.41 7.00 84.82 0.59 3.00 14 12 C 0.08 2.06 10.99 84.95 0.93 2.99 14 13 N -0.41 -9.93 10.49 -194.51 -2.04 -11.97 14 14 C 0.06 1.37 10.99 84.65 0.93 2.30 14 15 C 0.13 3.59 7.28 84.64 0.62 4.21 14 16 Cl -0.01 -0.19 29.13 -2.72 -0.08 -0.26 14 17 N -0.48 -16.75 9.59 -182.50 -1.75 -18.50 14 18 H 0.27 15.34 8.31 -92.70 -0.77 14.57 14 19 H 0.04 2.10 7.20 -2.39 -0.02 2.08 14 20 H 0.04 1.98 7.57 -2.39 -0.02 1.96 14 21 H 0.21 4.08 8.06 -2.91 -0.02 4.06 14 22 H 0.22 2.84 8.06 -2.91 -0.02 2.82 14 Total: -1.00 -63.98 235.85 2.34 -61.64 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: 1.19 Total: -4.62 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.07 Total: -13.23 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.49 Total: -86.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -1.23 Total: -2.64 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.26 kcal Total: -63.98 2.34 -61.64 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840353456.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.157 kcal (2) G-P(sol) polarization free energy of solvation -63.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds