Wall clock time and date at job start Sun Mar 29 2020 21:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00204 * 2 1 4 4 C 1.53001 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.53006 * 115.54958 * 56.99514 * 4 3 2 6 6 C 1.50697 * 109.46991 * 65.33499 * 5 4 3 7 7 O 1.21211 * 120.00375 * 5.79258 * 6 5 4 8 8 O 1.34320 * 119.99952 * 185.79048 * 6 5 4 9 9 C 1.34916 * 116.99719 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00658 * 0.02562 * 9 8 6 11 11 C 1.38759 * 119.99671 * 180.02562 * 9 8 6 12 12 N 1.31440 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00051 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47004 * 60.00200 * 13 11 9 15 15 H 1.48501 * 109.47061 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46970 * 299.99704 * 13 11 9 17 17 C 1.52997 * 117.50104 * 271.32344 * 4 3 2 18 18 C 1.53000 * 117.49937 * 202.66138 * 4 3 2 19 19 H 1.09004 * 109.46909 * 300.00239 * 1 2 3 20 20 H 1.08997 * 109.47370 * 59.99451 * 1 2 3 21 21 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47590 * 300.00030 * 3 2 1 23 23 H 1.08999 * 109.46991 * 60.00233 * 3 2 1 24 24 H 1.08995 * 109.47121 * 185.33329 * 5 4 3 25 25 H 1.09000 * 109.46960 * 305.33275 * 5 4 3 26 26 H 0.97002 * 120.00164 * 180.02562 * 12 11 9 27 27 H 1.08995 * 117.49646 * 0.02562 * 17 4 3 28 28 H 1.08997 * 117.49886 * 145.01933 * 17 4 3 29 29 H 1.09002 * 117.50332 * 214.98024 * 18 4 3 30 30 H 1.09001 * 117.49845 * 0.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 6 4.4823 1.2671 -1.1587 6 6 4.0869 1.9236 -2.4563 7 8 3.3750 2.9046 -2.4470 8 8 4.5235 1.4217 -3.6232 9 6 4.1324 2.0566 -4.7475 10 1 3.4969 2.9274 -4.6829 11 6 4.5467 1.5907 -5.9872 12 7 5.3206 0.5312 -6.0659 13 14 4.0059 2.4701 -7.5440 14 1 4.4848 3.8753 -7.5105 15 1 4.5798 1.7801 -8.7271 16 1 2.5236 2.4542 -7.6319 17 6 4.4485 1.9881 1.3558 18 6 4.3035 3.2637 0.5221 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8032 2.2371 -0.8900 23 1 1.8032 2.2370 0.8900 24 1 5.5573 1.3706 -1.0120 25 1 4.2202 0.2096 -1.1919 26 1 5.6106 0.2057 -6.9325 27 1 3.8300 1.8967 2.2486 28 1 5.4402 1.5410 1.4231 29 1 5.1999 3.6553 0.0414 30 1 3.5896 4.0118 0.8669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845352160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:09 Heat of formation + Delta-G solvation = -63.449635 kcal Electronic energy + Delta-G solvation = -14078.436320 eV Core-core repulsion = 11580.172272 eV Total energy + Delta-G solvation = -2498.264048 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22716 -37.60011 -34.86458 -32.06576 -29.51120 -29.08510 -27.86211 -25.07962 -22.25829 -20.79178 -18.66786 -17.62651 -16.45382 -15.95265 -15.16451 -14.99675 -14.44292 -14.25746 -13.99673 -13.69060 -13.53357 -12.82839 -12.40202 -12.16023 -11.78130 -11.53548 -11.35824 -11.14637 -11.02261 -10.43844 -10.26491 -10.11170 -10.10388 -9.73901 -9.39937 -8.79817 -8.50187 -7.42972 -6.33386 -4.01026 1.83952 2.78542 3.17643 3.21710 3.25877 3.65004 3.85643 4.12366 4.66052 4.81685 5.00855 5.08527 5.18656 5.21109 5.23041 5.28958 5.58897 5.75237 5.78845 5.96524 5.99256 6.08260 6.26948 6.29742 6.34724 6.93024 7.46377 8.03708 8.81759 9.15458 9.96994 10.84976 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.007158 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.618529 B = 3910.724468 C = 4342.404372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.260 6.260 3 C -0.043 4.043 4 C -0.089 4.089 5 C -0.070 4.070 6 C 0.405 3.595 7 O -0.554 6.554 8 O -0.217 6.217 9 C -0.380 4.380 10 H 0.093 0.907 11 C 0.041 3.959 12 N -0.867 5.867 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.271 1.271 17 C -0.170 4.170 18 C -0.151 4.151 19 H 0.071 0.929 20 H 0.076 0.924 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.269 0.731 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 0.560 12.314 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.034 6.034 3 C -0.191 4.191 4 C -0.090 4.090 5 C -0.108 4.108 6 C 0.251 3.749 7 O -0.451 6.451 8 O -0.124 6.124 9 C -0.457 4.457 10 H 0.111 0.889 11 C -0.162 4.162 12 N -0.504 5.504 13 Si 0.766 3.234 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.196 1.196 17 C -0.207 4.207 18 C -0.190 4.190 19 H 0.090 0.910 20 H 0.095 0.905 21 H 0.116 0.884 22 H 0.119 0.881 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.153 -0.223 12.120 12.814 hybrid contribution -1.129 1.420 -0.831 1.995 sum -5.282 1.197 11.289 12.521 Atomic orbital electron populations 1.23354 0.95147 1.06121 1.04627 1.86809 1.06343 1.12253 1.97988 1.22959 0.97055 0.93632 1.05439 1.20579 0.91863 1.01942 0.94603 1.20646 1.00455 1.00898 0.88823 1.23033 0.81167 0.84166 0.86504 1.90504 1.38707 1.27787 1.88122 1.83888 1.63182 1.52168 1.13171 1.21125 1.31542 1.12028 0.80994 0.88924 1.25303 0.96185 0.96352 0.98405 1.69987 1.32619 1.22199 1.25633 0.85783 0.79018 0.79042 0.79531 1.19595 1.20410 1.19596 1.23144 1.01882 1.01898 0.93790 1.22975 1.02908 0.90659 1.02466 0.90981 0.90507 0.88350 0.88064 0.90620 0.88956 0.88070 0.92147 0.88641 0.88479 0.88419 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.76 101.05 1.09 -0.38 16 2 S -0.26 -4.01 21.21 -107.50 -2.28 -6.29 16 3 C -0.04 -0.68 5.59 37.16 0.21 -0.47 16 4 C -0.09 -1.42 1.10 -154.51 -0.17 -1.59 16 5 C -0.07 -1.34 5.48 -27.88 -0.15 -1.49 16 6 C 0.40 10.09 7.72 36.00 0.28 10.37 16 7 O -0.55 -14.54 13.81 -19.05 -0.26 -14.81 16 8 O -0.22 -6.37 9.75 -20.72 -0.20 -6.58 16 9 C -0.38 -11.49 9.65 30.92 0.30 -11.19 16 10 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 11 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 12 N -0.87 -26.01 13.67 55.48 0.76 -25.25 16 13 Si 0.94 21.75 29.55 -169.99 -5.02 16.73 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C -0.17 -2.14 9.92 -26.69 -0.26 -2.40 16 18 C -0.15 -2.15 9.86 -26.69 -0.26 -2.42 16 19 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 20 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.10 1.88 6.73 -51.92 -0.35 1.53 16 23 H 0.08 1.01 8.11 -51.92 -0.42 0.59 16 24 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 25 H 0.10 1.92 7.17 -51.93 -0.37 1.55 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 277.12 15.07 4.18 4.18 Total: -1.00 -32.88 277.12 -5.93 -38.81 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.02 Total: 1.69 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 0.92 Total: -8.48 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.76 Total: -25.25 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.46 Total: -21.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.28 Total: -6.29 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.88 -5.93 -38.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845352160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.641 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds