Wall clock time and date at job start Sun Mar 29 2020 21:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00204 * 2 1 4 4 C 1.53001 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.53006 * 115.54958 * 56.99514 * 4 3 2 6 6 C 1.50697 * 109.46991 * 65.33499 * 5 4 3 7 7 O 1.21211 * 120.00375 * 5.79258 * 6 5 4 8 8 O 1.34320 * 119.99952 * 185.79048 * 6 5 4 9 9 C 1.34916 * 116.99719 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00658 * 0.02562 * 9 8 6 11 11 C 1.38759 * 119.99671 * 180.02562 * 9 8 6 12 12 N 1.31440 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00051 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47004 * 60.00200 * 13 11 9 15 15 H 1.48501 * 109.47061 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46970 * 299.99704 * 13 11 9 17 17 C 1.52997 * 117.50104 * 271.32344 * 4 3 2 18 18 C 1.53000 * 117.49937 * 202.66138 * 4 3 2 19 19 H 1.09004 * 109.46909 * 300.00239 * 1 2 3 20 20 H 1.08997 * 109.47370 * 59.99451 * 1 2 3 21 21 H 1.08998 * 109.47268 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47590 * 300.00030 * 3 2 1 23 23 H 1.08999 * 109.46991 * 60.00233 * 3 2 1 24 24 H 1.08995 * 109.47121 * 185.33329 * 5 4 3 25 25 H 1.09000 * 109.46960 * 305.33275 * 5 4 3 26 26 H 0.97002 * 120.00164 * 180.02562 * 12 11 9 27 27 H 1.08995 * 117.49646 * 0.02562 * 17 4 3 28 28 H 1.08997 * 117.49886 * 145.01933 * 17 4 3 29 29 H 1.09002 * 117.50332 * 214.98024 * 18 4 3 30 30 H 1.09001 * 117.49845 * 0.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 6 4.4823 1.2671 -1.1587 6 6 4.0869 1.9236 -2.4563 7 8 3.3750 2.9046 -2.4470 8 8 4.5235 1.4217 -3.6232 9 6 4.1324 2.0566 -4.7475 10 1 3.4969 2.9274 -4.6829 11 6 4.5467 1.5907 -5.9872 12 7 5.3206 0.5312 -6.0659 13 14 4.0059 2.4701 -7.5440 14 1 4.4848 3.8753 -7.5105 15 1 4.5798 1.7801 -8.7271 16 1 2.5236 2.4542 -7.6319 17 6 4.4485 1.9881 1.3558 18 6 4.3035 3.2637 0.5221 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8032 2.2371 -0.8900 23 1 1.8032 2.2370 0.8900 24 1 5.5573 1.3706 -1.0120 25 1 4.2202 0.2096 -1.1919 26 1 5.6106 0.2057 -6.9325 27 1 3.8300 1.8967 2.2486 28 1 5.4402 1.5410 1.4231 29 1 5.1999 3.6553 0.0414 30 1 3.5896 4.0118 0.8669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845352160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:09 Heat of formation + Delta-G solvation = -83.207559 kcal Electronic energy + Delta-G solvation = -14079.293088 eV Core-core repulsion = 11580.172272 eV Total energy + Delta-G solvation = -2499.120816 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11234 -39.06568 -36.91588 -34.27556 -30.99888 -30.15994 -29.09416 -27.24012 -23.33992 -22.61347 -20.08257 -19.81576 -18.40680 -17.31516 -16.84823 -16.40714 -16.30813 -15.99098 -15.52964 -14.90354 -14.55640 -14.22970 -13.89741 -13.68139 -13.50967 -13.21011 -12.83083 -12.47755 -12.33463 -12.24531 -12.16931 -11.95664 -11.36686 -11.26510 -10.91657 -10.68218 -10.42874 -8.63753 -8.51552 -6.31278 0.72069 1.32712 1.33764 1.49053 1.66036 1.72636 2.11402 2.62608 2.99265 3.16571 3.58999 3.74877 3.81210 4.08587 4.29194 4.32825 4.41358 4.57136 4.63357 4.74236 4.81305 4.83631 4.94036 5.05518 5.08134 5.23490 5.27545 5.86059 6.72820 6.93580 7.83827 8.69551 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.007158 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.618529 B = 3910.724468 C = 4342.404372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.305 6.305 3 C -0.032 4.032 4 C -0.120 4.120 5 C -0.061 4.061 6 C 0.403 3.597 7 O -0.569 6.569 8 O -0.252 6.252 9 C -0.419 4.419 10 H 0.081 0.919 11 C -0.007 4.007 12 N -0.906 5.906 13 Si 1.016 2.984 14 H -0.261 1.261 15 H -0.260 1.260 16 H -0.263 1.263 17 C -0.132 4.132 18 C -0.156 4.156 19 H 0.095 0.905 20 H 0.068 0.932 21 H 0.114 0.886 22 H 0.063 0.937 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.278 0.722 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 0.900 13.272 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.079 6.079 3 C -0.179 4.179 4 C -0.122 4.122 5 C -0.098 4.098 6 C 0.251 3.749 7 O -0.467 6.467 8 O -0.161 6.161 9 C -0.495 4.495 10 H 0.098 0.902 11 C -0.206 4.206 12 N -0.544 5.544 13 Si 0.835 3.165 14 H -0.186 1.186 15 H -0.184 1.184 16 H -0.187 1.187 17 C -0.169 4.169 18 C -0.195 4.195 19 H 0.114 0.886 20 H 0.088 0.912 21 H 0.133 0.867 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.614 0.117 13.109 13.898 hybrid contribution -1.022 1.304 -1.022 1.946 sum -5.636 1.421 12.087 13.412 Atomic orbital electron populations 1.23423 0.91756 1.07482 1.05414 1.86897 1.10218 1.12699 1.98050 1.22826 0.96979 0.93335 1.04797 1.20626 0.92059 1.03816 0.95657 1.20738 1.01950 1.00533 0.86613 1.24268 0.79752 0.83752 0.87156 1.90472 1.39088 1.28630 1.88468 1.83914 1.64539 1.53323 1.14335 1.21343 1.33078 1.12731 0.82322 0.90161 1.26530 0.95543 0.96953 1.01610 1.70081 1.33491 1.23605 1.27204 0.84718 0.78963 0.78100 0.74768 1.18557 1.18364 1.18722 1.23251 1.02208 0.99145 0.92246 1.23060 1.02690 0.90961 1.02805 0.88641 0.91241 0.86704 0.91835 0.87918 0.87110 0.88182 0.91310 0.86288 0.87032 0.89276 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 10.76 113.37 1.22 -1.26 16 2 S -0.30 -9.15 21.21 -56.49 -1.20 -10.35 16 3 C -0.03 -0.97 5.59 71.98 0.40 -0.57 16 4 C -0.12 -3.71 1.10 -52.18 -0.06 -3.77 16 5 C -0.06 -2.31 5.48 29.85 0.16 -2.15 16 6 C 0.40 20.70 7.72 71.23 0.55 21.25 16 7 O -0.57 -30.83 13.81 20.77 0.29 -30.55 16 8 O -0.25 -15.41 9.75 14.82 0.14 -15.27 16 9 C -0.42 -26.14 9.65 67.94 0.66 -25.49 16 10 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 11 C -0.01 -0.39 5.49 84.88 0.47 0.07 16 12 N -0.91 -55.20 13.67 21.63 0.30 -54.90 16 13 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 17 C -0.13 -2.88 9.92 30.62 0.30 -2.58 16 18 C -0.16 -4.16 9.86 30.62 0.30 -3.86 16 19 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.06 2.40 6.73 -2.39 -0.02 2.39 16 23 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 24 H 0.11 3.75 8.09 -2.39 -0.02 3.73 16 25 H 0.10 3.84 7.17 -2.39 -0.02 3.82 16 26 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.29 277.12 6.68 -66.61 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.12 Total: 16.21 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.01 Total: -18.33 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.30 Total: -54.90 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: 0.43 Total: -45.82 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.20 Total: -10.35 kcal Total: -73.29 6.68 -66.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845352160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds