Wall clock time and date at job start Sun Mar 29 2020 22:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47096 * 179.97438 * 15 14 12 17 17 F 1.39908 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 19 19 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 20 20 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 22 22 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 23 23 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 24 24 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 25 25 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 26 26 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 27 27 H 1.08992 * 109.47468 * 300.00321 * 16 15 14 28 28 H 1.09000 * 109.46622 * 60.00340 * 16 15 14 29 29 H 1.09003 * 117.50064 * 359.97438 * 18 9 7 30 30 H 1.08997 * 117.50444 * 145.01778 * 18 9 7 31 31 H 1.08997 * 117.50286 * 214.97535 * 19 9 7 32 32 H 1.09000 * 117.49777 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 6 3.0187 -5.3773 6.4293 17 9 2.4383 -5.9039 7.5883 18 6 1.7501 -3.4765 -1.2119 19 6 0.4459 -2.7041 -1.4260 20 1 -0.4850 0.8401 0.0004 21 1 0.0685 -2.3412 1.6433 22 1 0.1031 -3.9677 0.9209 23 1 3.1883 -5.1437 3.7191 24 1 3.1533 -3.5170 4.4408 25 1 1.2822 -4.2112 5.9129 26 1 1.3175 -5.8376 5.1908 27 1 3.6541 -6.1317 5.9657 28 1 3.6194 -4.5054 6.6881 29 1 2.6136 -3.1810 -1.8078 30 1 1.6739 -4.5408 -0.9896 31 1 -0.4877 -3.2606 -1.3445 32 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850195844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:17 Heat of formation + Delta-G solvation = -132.395658 kcal Electronic energy + Delta-G solvation = -15818.187981 eV Core-core repulsion = 12886.554128 eV Total energy + Delta-G solvation = -2931.633853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.72431 -39.83103 -36.91604 -35.35937 -34.06579 -31.99153 -28.19600 -26.38781 -25.19289 -22.43549 -21.20799 -20.09816 -19.28424 -17.11458 -16.72438 -16.56513 -15.91520 -15.68752 -15.18875 -14.70629 -14.56865 -14.01111 -13.68523 -13.00229 -12.27174 -12.16849 -11.97970 -11.59507 -11.53066 -11.17643 -11.02043 -10.86905 -10.78712 -10.57219 -10.32351 -10.05995 -9.87791 -9.57257 -8.85928 -8.50408 -8.24078 -6.09928 -4.15418 2.72095 3.24015 3.27277 3.33778 3.36556 4.36356 4.58103 4.61702 4.64951 4.88355 5.15811 5.18181 5.20750 5.39631 5.49948 5.67333 5.84135 5.95702 6.10109 6.21488 6.30401 6.50059 6.63013 6.70047 6.99965 7.23623 7.33247 7.44333 7.83415 8.32133 8.41554 8.86408 9.50597 10.99578 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.005829 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.743952 B = 4802.228018 C = 5306.518018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.116 3.884 11 O -0.338 6.338 12 C 0.452 3.548 13 O -0.524 6.524 14 C -0.113 4.113 15 C -0.143 4.143 16 C 0.063 3.937 17 F -0.219 7.219 18 C -0.205 4.205 19 C -0.146 4.146 20 H 0.262 0.738 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -8.058 7.152 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.036 3.964 10 C 0.043 3.957 11 O -0.253 6.253 12 C 0.296 3.704 13 O -0.414 6.414 14 C -0.151 4.151 15 C -0.181 4.181 16 C 0.008 3.992 17 F -0.201 7.201 18 C -0.242 4.242 19 C -0.183 4.183 20 H 0.071 0.929 21 H 0.094 0.906 22 H 0.057 0.943 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.188 -7.961 7.215 11.931 hybrid contribution 0.129 0.953 -0.045 0.962 sum 5.316 -7.008 7.170 11.349 Atomic orbital electron populations 1.69998 1.05937 1.26758 1.49116 1.25024 0.94857 0.99117 0.94484 0.86577 0.79947 0.83214 0.78200 1.20538 1.21237 1.19740 1.20386 0.93074 0.88322 1.50996 0.91849 1.18792 0.98903 0.94230 0.84508 1.22897 0.85837 0.96976 0.90014 1.86511 1.41637 1.70916 1.26230 1.23433 0.89767 0.74674 0.82562 1.90626 1.21670 1.52139 1.76985 1.21183 0.96845 1.03619 0.93419 1.21980 0.98376 1.03323 0.94432 1.21982 0.95403 0.99389 0.82436 1.92767 1.86774 1.88646 1.51872 1.23005 0.98418 0.95687 1.07115 1.22545 0.92486 1.01269 1.02015 0.92864 0.90565 0.94346 0.87733 0.87469 0.89764 0.89908 0.90558 0.90479 0.90046 0.91548 0.91633 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 12.93 55.43 0.72 -24.05 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.49 -13.22 8.77 -34.44 -0.30 -13.52 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.89 1.61 -155.67 -0.25 0.64 16 10 C 0.12 2.74 5.28 37.15 0.20 2.94 16 11 O -0.34 -7.23 10.16 -39.26 -0.40 -7.62 16 12 C 0.45 8.27 7.96 36.01 0.29 8.56 16 13 O -0.52 -11.00 15.73 -18.75 -0.29 -11.30 16 14 C -0.11 -1.35 5.81 -27.88 -0.16 -1.52 16 15 C -0.14 -1.61 4.96 -26.73 -0.13 -1.74 16 16 C 0.06 0.55 7.55 37.16 0.28 0.83 16 17 F -0.22 -2.59 17.36 2.25 0.04 -2.55 16 18 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 19 C -0.15 -3.36 9.43 -26.69 -0.25 -3.61 16 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.08 2.00 8.13 -51.93 -0.42 1.58 16 22 H 0.04 0.86 8.09 -51.92 -0.42 0.44 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -30.43 287.44 -5.94 -36.36 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.61 Total: -0.64 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.70 Total: -10.34 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.72 Total: -24.05 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.69 Total: -18.92 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.43 -5.94 -36.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850195844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.034 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds