Wall clock time and date at job start Sun Mar 29 2020 22:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46923 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47096 * 179.97438 * 15 14 12 17 17 F 1.39908 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 19 19 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 20 20 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 22 22 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 23 23 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 24 24 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 25 25 H 1.08992 * 109.47224 * 300.00268 * 15 14 12 26 26 H 1.09006 * 109.47165 * 60.00025 * 15 14 12 27 27 H 1.08992 * 109.47468 * 300.00321 * 16 15 14 28 28 H 1.09000 * 109.46622 * 60.00340 * 16 15 14 29 29 H 1.09003 * 117.50064 * 359.97438 * 18 9 7 30 30 H 1.08997 * 117.50444 * 145.01778 * 18 9 7 31 31 H 1.08997 * 117.50286 * 214.97535 * 19 9 7 32 32 H 1.09000 * 117.49777 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 6 1.9180 -4.9655 5.4496 16 6 3.0187 -5.3773 6.4293 17 9 2.4383 -5.9039 7.5883 18 6 1.7501 -3.4765 -1.2119 19 6 0.4459 -2.7041 -1.4260 20 1 -0.4850 0.8401 0.0004 21 1 0.0685 -2.3412 1.6433 22 1 0.1031 -3.9677 0.9209 23 1 3.1883 -5.1437 3.7191 24 1 3.1533 -3.5170 4.4408 25 1 1.2822 -4.2112 5.9129 26 1 1.3175 -5.8376 5.1908 27 1 3.6541 -6.1317 5.9657 28 1 3.6194 -4.5054 6.6881 29 1 2.6136 -3.1810 -1.8078 30 1 1.6739 -4.5408 -0.9896 31 1 -0.4877 -3.2606 -1.3445 32 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850195844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:16 Heat of formation + Delta-G solvation = -149.164951 kcal Electronic energy + Delta-G solvation = -15818.915152 eV Core-core repulsion = 12886.554128 eV Total energy + Delta-G solvation = -2932.361025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.53364 -41.38304 -38.66755 -37.02073 -35.09979 -34.03205 -29.51210 -27.97177 -27.07624 -23.46077 -22.95042 -21.43403 -21.19350 -18.61164 -18.35297 -17.73726 -17.21917 -16.99615 -16.57890 -16.32726 -15.76563 -15.47235 -15.04052 -14.64362 -13.86813 -13.74515 -13.59169 -13.00363 -12.89171 -12.78487 -12.45660 -12.39720 -12.10175 -12.02633 -11.69035 -11.68167 -11.51936 -11.34391 -10.79088 -10.50067 -10.09222 -8.14649 -6.26123 1.27111 1.42241 1.43499 1.53268 1.83588 2.42180 3.14648 3.38767 3.66088 3.69056 3.87479 4.12443 4.14088 4.27976 4.37322 4.41497 4.47093 4.60588 4.65093 4.76064 4.89481 4.95915 4.96464 5.17467 5.23615 5.45799 5.57515 5.73362 5.75540 6.34803 6.79752 6.84913 7.43012 8.94453 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029916 B = 0.005829 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.743952 B = 4802.228018 C = 5306.518018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.001 3.999 10 C 0.129 3.871 11 O -0.348 6.348 12 C 0.444 3.556 13 O -0.558 6.558 14 C -0.100 4.100 15 C -0.140 4.140 16 C 0.064 3.936 17 F -0.238 7.238 18 C -0.175 4.175 19 C -0.150 4.150 20 H 0.261 0.739 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.141 0.859 24 H 0.131 0.869 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -8.723 7.495 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.001 3.999 10 C 0.055 3.945 11 O -0.263 6.263 12 C 0.290 3.710 13 O -0.450 6.450 14 C -0.137 4.137 15 C -0.178 4.178 16 C 0.010 3.990 17 F -0.219 7.219 18 C -0.212 4.212 19 C -0.187 4.187 20 H 0.070 0.930 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.158 0.842 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.274 -8.640 7.563 13.593 hybrid contribution -0.525 1.111 -0.122 1.235 sum 6.749 -7.529 7.441 12.554 Atomic orbital electron populations 1.70113 1.07278 1.27341 1.50255 1.25755 0.95580 1.02280 0.94266 0.85618 0.78852 0.79223 0.78370 1.19890 1.21327 1.18940 1.20650 0.93011 0.89708 1.50702 0.92386 1.18913 1.00533 0.94917 0.85545 1.22463 0.86076 0.96111 0.89881 1.86517 1.40750 1.71581 1.27459 1.24758 0.91011 0.73191 0.82045 1.90612 1.23693 1.53400 1.77284 1.21351 0.95027 1.05488 0.91846 1.21941 0.99058 1.02148 0.94696 1.22142 0.94477 1.01255 0.81166 1.92733 1.87203 1.88998 1.52961 1.23017 0.97418 0.96390 1.04371 1.22482 0.93914 1.01428 1.00893 0.93032 0.94430 0.93559 0.84156 0.85106 0.91863 0.91170 0.87615 0.88165 0.89425 0.88995 0.90573 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.19 12.93 21.45 0.28 -51.91 16 2 C 0.02 1.16 5.39 84.66 0.46 1.61 16 3 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.50 -27.16 8.77 25.60 0.22 -26.93 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.07 1.61 -52.93 -0.08 -0.02 16 10 C 0.13 6.14 5.28 71.98 0.38 6.52 16 11 O -0.35 -14.66 10.16 -51.44 -0.52 -15.19 16 12 C 0.44 15.90 7.96 71.24 0.57 16.47 16 13 O -0.56 -23.73 15.73 21.97 0.35 -23.39 16 14 C -0.10 -2.12 5.81 29.85 0.17 -1.95 16 15 C -0.14 -2.91 4.96 30.59 0.15 -2.75 16 16 C 0.06 0.93 7.55 71.98 0.54 1.47 16 17 F -0.24 -5.17 17.36 44.97 0.78 -4.39 16 18 C -0.17 -7.22 9.96 30.62 0.30 -6.91 16 19 C -0.15 -6.86 9.43 30.62 0.29 -6.58 16 20 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 21 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 22 H 0.05 2.08 8.09 -2.38 -0.02 2.06 16 23 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 26 H 0.07 1.62 8.10 -2.38 -0.02 1.60 16 27 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 31 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.07 3.40 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -66.78 287.44 7.01 -59.77 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.09 Total: 9.41 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 3.01 Total: -19.06 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.28 Total: -51.91 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.18 Total: -38.57 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -66.78 7.01 -59.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850195844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.394 kcal (2) G-P(sol) polarization free energy of solvation -66.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds