Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28434 * 125.19342 * 2 1 4 4 C 1.30862 * 111.00766 * 179.73980 * 3 2 1 5 5 C 1.39761 * 107.90671 * 0.41908 * 4 3 2 6 6 Cl 1.73599 * 127.34564 * 179.86813 * 5 4 3 7 7 C 1.36824 * 125.19297 * 180.02562 * 2 1 3 8 8 C 1.46799 * 126.91924 * 359.97438 * 7 2 1 9 9 O 1.21608 * 119.99438 * 180.02562 * 8 7 2 10 10 O 1.34832 * 120.00329 * 0.02562 * 8 7 2 11 11 C 1.34845 * 117.00141 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00034 * 359.97438 * 11 10 8 13 13 C 1.38814 * 120.00151 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99595 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46861 * 60.00038 * 15 13 11 17 17 H 1.48493 * 109.47056 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47258 * 300.00087 * 15 13 11 19 19 H 1.09002 * 109.47065 * 269.99741 * 1 2 3 20 20 H 1.08996 * 109.47443 * 29.99674 * 1 2 3 21 21 H 1.09005 * 109.47833 * 149.99890 * 1 2 3 22 22 H 1.08004 * 126.04337 * 180.26161 * 4 3 2 23 23 H 0.97003 * 119.99546 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4739 0.7289 0.0055 5 6 3.5646 -0.6658 -0.0002 6 17 5.0102 -1.6270 0.0003 7 6 2.2535 -1.1181 -0.0005 8 6 1.8026 -2.5152 -0.0006 9 8 2.6182 -3.4172 -0.0006 10 8 0.4843 -2.7982 -0.0007 11 6 0.1379 -4.1014 -0.0002 12 1 0.9031 -4.8635 -0.0003 13 6 -1.2022 -4.4633 0.0002 14 7 -2.1333 -3.5359 -0.0003 15 14 -1.6820 -6.2687 0.0001 16 1 -1.1321 -6.9270 1.2123 17 1 -3.1622 -6.3874 0.0001 18 1 -1.1331 -6.9267 -1.2127 19 1 -0.3633 0.0000 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3635 -0.8900 -0.5139 22 1 4.3040 1.4198 0.0108 23 1 -3.0697 -3.7889 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850316514.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = -23.370454 kcal Electronic energy + Delta-G solvation = -13800.357822 eV Core-core repulsion = 11062.414593 eV Total energy + Delta-G solvation = -2737.943229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.66547 -40.86721 -37.68814 -37.25642 -34.53892 -34.16108 -32.02129 -28.17618 -27.72236 -24.76472 -22.70838 -21.49516 -19.99322 -19.25384 -17.60014 -17.51099 -16.59394 -16.28518 -16.26952 -15.54440 -15.12629 -14.51457 -14.08846 -13.72290 -13.39459 -13.22291 -12.86828 -12.83435 -12.45559 -12.18051 -12.07259 -11.57147 -11.26579 -10.73426 -10.43252 -9.87625 -8.60675 -6.35417 -0.11140 0.81461 1.33903 1.35441 1.42842 1.49476 1.66098 1.94779 2.01374 2.50564 2.96265 3.49504 3.70598 4.12474 4.31434 4.37497 4.59462 4.88294 5.06829 5.14055 5.52758 5.74728 6.45790 6.77776 6.85424 7.58010 8.58357 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.008610 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.446926 B = 3251.134312 C = 3998.435865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.259 5.259 3 N -0.269 5.269 4 C 0.026 3.974 5 C -0.107 4.107 6 Cl -0.010 7.010 7 C -0.010 4.010 8 C 0.457 3.543 9 O -0.545 6.545 10 O -0.220 6.220 11 C -0.419 4.419 12 H 0.085 0.915 13 C 0.008 3.992 14 N -0.886 5.886 15 Si 1.014 2.986 16 H -0.264 1.264 17 H -0.259 1.259 18 H -0.264 1.264 19 H 0.094 0.906 20 H 0.127 0.873 21 H 0.093 0.907 22 H 0.239 0.761 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 7.078 -0.062 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.049 5.049 3 N -0.102 5.102 4 C -0.149 4.149 5 C -0.145 4.145 6 Cl 0.018 6.982 7 C -0.138 4.138 8 C 0.304 3.696 9 O -0.441 6.441 10 O -0.128 6.128 11 C -0.494 4.494 12 H 0.102 0.898 13 C -0.195 4.195 14 N -0.522 5.522 15 Si 0.833 3.167 16 H -0.189 1.189 17 H -0.182 1.182 18 H -0.188 1.188 19 H 0.112 0.888 20 H 0.145 0.855 21 H 0.112 0.888 22 H 0.255 0.745 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.874 7.672 -0.067 8.595 hybrid contribution 0.426 -1.650 0.033 1.705 sum 4.300 6.022 -0.034 7.400 Atomic orbital electron populations 1.22547 0.70151 1.06668 1.05831 1.45889 1.08875 1.01271 1.48820 1.73205 1.03735 1.13376 1.19900 1.24112 0.94506 0.91663 1.04665 1.21482 0.86888 0.93492 1.12653 1.98330 1.31824 1.71034 1.96975 1.20569 0.91580 0.86787 1.14825 1.19851 0.82840 0.87364 0.79566 1.90703 1.55061 1.47116 1.51203 1.83915 1.22483 1.30329 1.76053 1.21460 0.93320 0.79726 1.54915 0.89753 1.26400 0.93348 1.05336 0.94398 1.69972 1.01530 1.35513 1.45164 0.84722 0.78141 0.74139 0.79678 1.18857 1.18230 1.18848 0.88786 0.85501 0.88831 0.74486 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.81 127.77 1.38 4.22 14 2 N -0.26 -9.50 3.76 -355.97 -1.34 -10.83 14 3 N -0.27 -8.62 11.89 -57.08 -0.68 -9.30 14 4 C 0.03 0.76 12.03 85.21 1.03 1.78 14 5 C -0.11 -3.87 6.88 22.75 0.16 -3.71 14 6 Cl -0.01 -0.35 28.13 -2.72 -0.08 -0.43 14 7 C -0.01 -0.43 6.96 40.71 0.28 -0.15 14 8 C 0.46 23.58 7.86 70.06 0.55 24.13 14 9 O -0.55 -30.15 15.08 19.49 0.29 -29.86 14 10 O -0.22 -12.20 7.21 10.41 0.08 -12.13 14 11 C -0.42 -24.04 9.65 67.96 0.66 -23.39 14 12 H 0.08 4.97 6.86 -2.91 -0.02 4.95 14 13 C 0.01 0.41 5.50 84.89 0.47 0.87 14 14 N -0.89 -47.48 13.67 21.64 0.30 -47.19 14 15 Si 1.01 41.00 29.55 68.60 2.03 43.03 14 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 14 17 H -0.26 -9.57 7.11 99.48 0.71 -8.87 14 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 14 19 H 0.09 2.93 8.14 -2.39 -0.02 2.91 14 20 H 0.13 3.17 8.14 -2.39 -0.02 3.15 14 21 H 0.09 3.76 6.15 -2.38 -0.01 3.74 14 22 H 0.24 4.34 8.06 -2.91 -0.02 4.31 14 23 H 0.28 13.78 8.31 -92.71 -0.77 13.01 14 Total: -1.00 -65.57 235.97 6.37 -59.20 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.25 Total: 3.76 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.52 Total: 3.76 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -1.72 Total: -67.32 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: 0.37 Total: -41.99 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -65.57 6.37 -59.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850316514.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.828 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds