Wall clock time and date at job start Sun Mar 29 2020 21:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 O 1.42899 * 110.45508 * 34.29377 * 14 12 11 16 16 C 1.54506 * 110.51448 * 156.90073 * 14 12 11 17 17 C 1.54489 * 104.06037 * 118.64471 * 16 14 12 18 18 O 1.44427 * 104.80200 * 23.97866 * 17 16 14 19 19 C 1.44635 * 105.36932 * 319.56405 * 18 17 16 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 0.96700 * 114.00738 * 300.70434 * 15 14 12 26 26 H 1.08999 * 110.51501 * 237.28661 * 16 14 12 27 27 H 1.08997 * 110.51038 * 0.02562 * 16 14 12 28 28 H 1.09004 * 110.36778 * 142.81422 * 17 16 14 29 29 H 1.09001 * 110.36977 * 265.14805 * 17 16 14 30 30 H 1.08998 * 110.34481 * 281.59446 * 19 18 17 31 31 H 1.09007 * 110.50454 * 159.18386 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5195 -4.9194 0.0167 12 6 2.2506 -6.0451 0.0222 13 8 3.4573 -5.9819 0.0223 14 6 1.5666 -7.3879 0.0284 15 8 0.3545 -7.3344 -0.7266 16 6 2.5070 -8.4772 -0.5339 17 6 2.6831 -9.4643 0.6414 18 8 1.5112 -9.2720 1.4634 19 6 1.2824 -7.8440 1.4768 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 -0.2849 -6.6872 -0.3988 26 1 2.0464 -8.9766 -1.3863 27 1 3.4669 -8.0446 -0.8160 28 1 2.7244 -10.4893 0.2730 29 1 3.5852 -9.2261 1.2050 30 1 1.9685 -7.3567 2.1695 31 1 0.2494 -7.6253 1.7477 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853919561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:09 Heat of formation + Delta-G solvation = -188.609074 kcal Electronic energy + Delta-G solvation = -16178.240485 eV Core-core repulsion = 13231.796246 eV Total energy + Delta-G solvation = -2946.444240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.89399 -39.05252 -36.37659 -36.25430 -33.41198 -31.43514 -30.43067 -29.13382 -25.44002 -23.82244 -22.91937 -21.04061 -20.24328 -18.47765 -16.99179 -16.91436 -16.46927 -16.02583 -15.88742 -15.38364 -14.65358 -14.18433 -13.54602 -13.36410 -13.15545 -12.81026 -12.41660 -12.19203 -11.96320 -11.47598 -11.33828 -11.12733 -11.02450 -10.83481 -10.71332 -10.19239 -9.92216 -9.78071 -9.63616 -9.36027 -8.50395 -6.16301 -4.21234 2.19602 2.79558 3.24911 3.31275 3.34965 3.65246 3.89288 4.12452 4.33852 4.46011 4.86087 4.89844 4.95984 5.20510 5.25838 5.38366 5.45197 5.66729 5.71668 5.94136 5.96888 6.37736 6.51737 6.76596 7.33705 7.45854 7.52878 7.77401 7.96501 8.16151 8.83992 9.43741 10.95113 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062269 B = 0.004921 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.554751 B = 5688.738257 C = 5866.227789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.354 6.354 12 C 0.439 3.561 13 O -0.505 6.505 14 C 0.115 3.885 15 O -0.534 6.534 16 C -0.140 4.140 17 C 0.046 3.954 18 O -0.364 6.364 19 C 0.032 3.968 20 H 0.264 0.736 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.394 0.606 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 -15.562 1.178 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.269 6.269 12 C 0.280 3.720 13 O -0.394 6.394 14 C 0.071 3.929 15 O -0.341 6.341 16 C -0.177 4.177 17 C -0.030 4.030 18 O -0.282 6.282 19 C -0.045 4.045 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.244 0.756 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.729 -15.987 0.950 16.246 hybrid contribution 0.430 1.724 0.174 1.785 sum 3.158 -14.263 1.124 14.652 Atomic orbital electron populations 1.69963 1.06102 1.27102 1.49577 1.24975 0.94924 0.99416 0.94741 0.86461 0.79752 0.82741 0.78299 1.20427 1.20993 1.19718 1.20957 0.93178 0.90058 1.52496 0.92254 1.19186 0.94152 0.88944 0.98948 1.23741 0.96515 0.78409 1.01114 1.86485 1.42568 1.15897 1.81993 1.24090 0.87060 0.87706 0.73136 1.90633 1.15505 1.87940 1.45339 1.22452 0.86687 0.89768 0.93951 1.86568 1.26711 1.64251 1.56595 1.23035 0.99768 0.94716 1.00227 1.23504 0.89042 1.00205 0.90264 1.89189 1.46565 1.21613 1.70848 1.24077 1.03842 0.82757 0.93847 0.92629 0.95295 0.95242 0.92107 0.92138 0.75555 0.88246 0.87618 0.88134 0.91410 0.90730 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.60 5.40 37.16 0.20 1.80 16 11 O -0.35 -6.68 9.71 -44.17 -0.43 -7.11 16 12 C 0.44 7.42 6.80 36.00 0.24 7.66 16 13 O -0.51 -9.54 15.33 -18.76 -0.29 -9.83 16 14 C 0.11 1.53 1.43 -90.20 -0.13 1.40 16 15 O -0.53 -6.99 12.92 -48.05 -0.62 -7.61 16 16 C -0.14 -1.62 6.42 -25.16 -0.16 -1.78 16 17 C 0.05 0.47 7.64 37.94 0.29 0.76 16 18 O -0.36 -4.50 11.65 -35.23 -0.41 -4.91 16 19 C 0.03 0.38 6.94 37.94 0.26 0.64 16 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 24 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 25 H 0.39 4.15 8.71 45.56 0.40 4.54 16 26 H 0.10 1.07 8.00 -51.93 -0.42 0.65 16 27 H 0.11 1.28 6.78 -51.93 -0.35 0.93 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 31 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -31.40 272.63 -5.05 -36.45 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.27 Total: 0.32 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.15 Total: -2.32 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.74 Total: -25.17 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.75 Total: -29.46 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.40 -5.05 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853919561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.164 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds