Wall clock time and date at job start Sun Mar 29 2020 21:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 O 1.42899 * 110.45508 * 34.29377 * 14 12 11 16 16 C 1.54506 * 110.51448 * 156.90073 * 14 12 11 17 17 C 1.54489 * 104.06037 * 118.64471 * 16 14 12 18 18 O 1.44427 * 104.80200 * 23.97866 * 17 16 14 19 19 C 1.44635 * 105.36932 * 319.56405 * 18 17 16 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 0.96700 * 114.00738 * 300.70434 * 15 14 12 26 26 H 1.08999 * 110.51501 * 237.28661 * 16 14 12 27 27 H 1.08997 * 110.51038 * 0.02562 * 16 14 12 28 28 H 1.09004 * 110.36778 * 142.81422 * 17 16 14 29 29 H 1.09001 * 110.36977 * 265.14805 * 17 16 14 30 30 H 1.08998 * 110.34481 * 281.59446 * 19 18 17 31 31 H 1.09007 * 110.50454 * 159.18386 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5195 -4.9194 0.0167 12 6 2.2506 -6.0451 0.0222 13 8 3.4573 -5.9819 0.0223 14 6 1.5666 -7.3879 0.0284 15 8 0.3545 -7.3344 -0.7266 16 6 2.5070 -8.4772 -0.5339 17 6 2.6831 -9.4643 0.6414 18 8 1.5112 -9.2720 1.4634 19 6 1.2824 -7.8440 1.4768 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 -0.2849 -6.6872 -0.3988 26 1 2.0464 -8.9766 -1.3863 27 1 3.4669 -8.0446 -0.8160 28 1 2.7244 -10.4893 0.2730 29 1 3.5852 -9.2261 1.2050 30 1 1.9685 -7.3567 2.1695 31 1 0.2494 -7.6253 1.7477 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853919561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:09 Heat of formation + Delta-G solvation = -211.477134 kcal Electronic energy + Delta-G solvation = -16179.232119 eV Core-core repulsion = 13231.796246 eV Total energy + Delta-G solvation = -2947.435873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.15066 -40.21963 -37.86275 -37.31706 -35.46708 -32.51039 -32.27616 -30.12304 -27.29946 -25.08705 -23.99910 -22.87652 -21.44225 -19.78017 -18.60514 -18.05998 -17.98284 -17.42196 -17.17319 -16.57993 -16.31090 -15.44730 -15.11749 -14.53991 -14.46183 -14.31876 -13.78329 -13.33016 -13.21747 -13.08052 -12.89470 -12.64636 -12.60147 -12.37919 -12.03811 -11.73700 -11.56631 -11.50849 -11.17149 -10.81577 -10.62846 -8.28787 -6.42058 0.84345 1.37678 1.42174 1.45521 1.54755 2.38019 2.74347 2.92255 3.06081 3.07730 3.51811 3.59427 4.00529 4.11368 4.16305 4.17695 4.33596 4.50047 4.63966 4.70923 4.76805 4.87275 5.16407 5.42899 5.43699 5.51609 5.70126 6.03815 6.35538 6.54222 6.71374 7.28059 8.83584 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.062269 B = 0.004921 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.554751 B = 5688.738257 C = 5866.227789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.089 3.911 11 O -0.357 6.357 12 C 0.438 3.562 13 O -0.525 6.525 14 C 0.118 3.882 15 O -0.539 6.539 16 C -0.141 4.141 17 C 0.046 3.954 18 O -0.375 6.375 19 C 0.034 3.966 20 H 0.268 0.732 21 H 0.011 0.989 22 H 0.008 0.992 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.404 0.596 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -16.101 1.329 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.016 3.984 11 O -0.273 6.273 12 C 0.281 3.719 13 O -0.415 6.415 14 C 0.074 3.926 15 O -0.348 6.348 16 C -0.178 4.178 17 C -0.030 4.030 18 O -0.293 6.293 19 C -0.043 4.043 20 H 0.077 0.923 21 H 0.029 0.971 22 H 0.026 0.974 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.256 0.744 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.409 -16.548 1.102 16.931 hybrid contribution 0.195 1.814 0.110 1.828 sum 3.605 -14.734 1.212 15.216 Atomic orbital electron populations 1.70078 1.07755 1.28318 1.50263 1.25922 0.95815 1.03305 0.94023 0.85347 0.78568 0.77891 0.78648 1.19629 1.20372 1.18764 1.21364 0.93689 0.91272 1.52675 0.91773 1.18988 0.94309 0.90390 0.96928 1.23249 0.95197 0.78787 1.01126 1.86475 1.42584 1.15752 1.82487 1.24934 0.87022 0.88027 0.71917 1.90622 1.16485 1.88155 1.46219 1.22611 0.86830 0.87655 0.95468 1.86563 1.26717 1.64560 1.56946 1.23112 0.98993 0.94434 1.01256 1.23688 0.88594 1.01278 0.89414 1.89184 1.47462 1.21473 1.71230 1.24120 1.04959 0.82732 0.92508 0.92296 0.97103 0.97408 0.92272 0.91842 0.74426 0.87284 0.88338 0.85433 0.90728 0.90742 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.62 5.35 29.85 0.16 1.77 16 10 C 0.09 3.87 5.40 71.98 0.39 4.26 16 11 O -0.36 -13.43 9.71 -46.67 -0.45 -13.89 16 12 C 0.44 14.51 6.80 71.24 0.48 14.99 16 13 O -0.53 -19.52 15.33 21.94 0.34 -19.19 16 14 C 0.12 2.98 1.43 -10.52 -0.02 2.97 16 15 O -0.54 -13.34 12.92 -136.72 -1.77 -15.11 16 16 C -0.14 -3.01 6.42 31.61 0.20 -2.80 16 17 C 0.05 0.82 7.64 72.49 0.55 1.38 16 18 O -0.37 -8.41 11.65 -148.98 -1.74 -10.15 16 19 C 0.03 0.75 6.94 72.49 0.50 1.25 16 20 H 0.27 14.72 8.31 -92.71 -0.77 13.94 16 21 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 23 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 24 H 0.06 2.70 8.13 -2.38 -0.02 2.68 16 25 H 0.40 8.04 8.71 -74.06 -0.65 7.39 16 26 H 0.11 2.11 8.00 -2.39 -0.02 2.09 16 27 H 0.10 2.26 6.78 -2.39 -0.02 2.25 16 28 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.63 7.86 -2.39 -0.02 1.61 16 31 H 0.13 2.35 8.09 -2.38 -0.02 2.33 16 Total: -1.00 -65.97 272.63 2.16 -63.81 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.49 Total: 9.40 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 2.97 Total: -5.70 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.28 Total: -54.09 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -3.62 Total: -58.33 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -65.97 2.16 -63.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853919561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.664 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds