Wall clock time and date at job start Sun Mar 29 2020 22:03:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86803 * 120.00283 * 2 1
4 4 H 1.48497 * 109.47397 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47306 * 300.00701 * 3 2 1
6 6 H 1.48502 * 109.46996 * 59.99946 * 3 2 1
7 7 C 1.37876 * 119.99967 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99743 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99993 * 359.97438 * 7 2 1
10 10 S 1.81401 * 109.47142 * 180.02562 * 9 7 2
11 11 C 1.81404 * 102.99864 * 179.97438 * 10 9 7
12 12 O 1.42896 * 109.47244 * 74.99917 * 11 10 9
13 13 C 1.42896 * 114.00446 * 74.99674 * 12 11 10
14 14 C 1.52997 * 109.46906 * 89.99887 * 13 12 11
15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12
16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13
17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14
18 18 C 1.53000 * 109.47231 * 209.99746 * 13 12 11
19 19 H 0.97002 * 119.99472 * 359.97438 * 1 2 3
20 20 H 1.08996 * 109.47560 * 60.00054 * 9 7 2
21 21 H 1.09001 * 109.46758 * 300.00038 * 9 7 2
22 22 H 1.09000 * 109.47140 * 314.99276 * 11 10 9
23 23 H 1.09005 * 109.46699 * 194.99847 * 11 10 9
24 24 H 1.09002 * 109.46984 * 330.00066 * 13 12 11
25 25 H 1.08996 * 109.47853 * 300.00254 * 14 13 12
26 26 H 1.09002 * 109.47153 * 60.00282 * 14 13 12
27 27 H 1.09000 * 109.47486 * 180.02562 * 15 14 13
28 28 H 1.09002 * 109.46716 * 60.00091 * 15 14 13
29 29 H 1.09002 * 109.46935 * 299.99411 * 16 15 14
30 30 H 1.09001 * 109.46812 * 179.97438 * 16 15 14
31 31 H 1.08993 * 109.47194 * 179.97438 * 17 16 15
32 32 H 1.09002 * 109.46695 * 59.99734 * 17 16 15
33 33 H 1.08992 * 109.47399 * 300.00058 * 18 13 12
34 34 H 1.09004 * 109.46724 * 60.00544 * 18 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3966 -1.2124
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 16 2.4298 -3.8779 -0.0005
11 6 1.3515 -5.3367 0.0003
12 8 0.7875 -5.5128 -1.3008
13 6 1.7032 -6.0350 -2.2655
14 6 1.6359 -7.5635 -2.2573
15 6 2.6159 -8.1227 -3.2906
16 6 2.2429 -7.6033 -4.6806
17 6 2.3102 -6.0748 -4.6889
18 6 1.3307 -5.5157 -3.6557
19 1 -0.4849 0.8401 0.0004
20 1 0.6240 -2.5567 -0.8902
21 1 0.6247 -2.5570 0.8897
22 1 0.5515 -5.1967 0.7272
23 1 1.9339 -6.2188 0.2663
24 1 2.7149 -5.7145 -2.0169
25 1 1.9012 -7.9336 -1.2670
26 1 0.6242 -7.8840 -2.5059
27 1 2.5677 -9.2117 -3.2851
28 1 3.6277 -7.8022 -3.0424
29 1 1.2311 -7.9238 -4.9288
30 1 2.9414 -8.0013 -5.4167
31 1 2.0449 -5.7048 -5.6792
32 1 3.3220 -5.7543 -4.4406
33 1 0.3191 -5.8362 -3.9043
34 1 1.3787 -4.4267 -3.6615
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000865370786.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:03:33
Heat of formation + Delta-G solvation = -79.983267 kcal
Electronic energy + Delta-G solvation = -14173.059852 eV
Core-core repulsion = 11809.911946 eV
Total energy + Delta-G solvation = -2363.147906 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-38.96469 -36.17872 -33.10573 -30.74569 -29.80875 -28.46070 -26.28255 -22.98872
-22.51032 -22.06312 -19.79548 -16.73180 -16.50820 -15.75909 -15.60893 -14.67165
-14.54552 -14.14819 -13.75206 -13.38258 -12.96737 -12.44738 -12.20948 -12.15558
-12.11906 -11.89910 -11.12485 -10.99922 -10.90060 -10.88062 -10.58111 -10.51462
-10.24606 -9.97411 -9.53608 -9.18136 -8.59456 -8.58635 -6.87850 -6.15423
-4.19526 2.63173 3.26915 3.33962 3.40171 3.80006 3.98581 4.38445
4.75467 4.78037 4.96048 5.21477 5.23120 5.28932 5.40532 5.45785
5.53315 5.58164 5.64423 5.72553 5.81932 6.00272 6.04211 6.15000
6.17609 6.25442 6.45656 6.48661 7.14851 7.23452 7.43470 7.78918
8.05777 8.82433 9.43087 10.95777
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.039362 B = 0.005768 C = 0.005439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 711.167019 B = 4853.219656 C = 5146.885362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.065 3.935
3 Si 0.905 3.095
4 H -0.270 1.270
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.512 4.512
8 H 0.067 0.933
9 C 0.102 3.898
10 S -0.338 6.338
11 C 0.093 3.907
12 O -0.369 6.369
13 C 0.087 3.913
14 C -0.140 4.140
15 C -0.116 4.116
16 C -0.121 4.121
17 C -0.116 4.116
18 C -0.114 4.114
19 H 0.264 0.736
20 H 0.041 0.959
21 H 0.035 0.965
22 H 0.104 0.896
23 H 0.078 0.922
24 H 0.072 0.928
25 H 0.059 0.941
26 H 0.067 0.933
27 H 0.061 0.939
28 H 0.062 0.938
29 H 0.061 0.939
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.064 0.936
33 H 0.065 0.935
34 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.043 -14.258 -6.399 15.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.139 4.139
3 Si 0.732 3.268
4 H -0.195 1.195
5 H -0.207 1.207
6 H -0.208 1.208
7 C -0.551 4.551
8 H 0.085 0.915
9 C -0.045 4.045
10 S -0.114 6.114
11 C -0.094 4.094
12 O -0.288 6.288
13 C 0.028 3.972
14 C -0.178 4.178
15 C -0.154 4.154
16 C -0.158 4.158
17 C -0.154 4.154
18 C -0.152 4.152
19 H 0.074 0.926
20 H 0.059 0.941
21 H 0.053 0.947
22 H 0.122 0.878
23 H 0.097 0.903
24 H 0.090 0.910
25 H 0.078 0.922
26 H 0.085 0.915
27 H 0.079 0.921
28 H 0.081 0.919
29 H 0.080 0.920
30 H 0.079 0.921
31 H 0.084 0.916
32 H 0.083 0.917
33 H 0.083 0.917
34 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 3.786 -14.091 -6.433 15.945
hybrid contribution -0.739 0.785 0.181 1.093
sum 3.047 -13.305 -6.251 15.013
Atomic orbital electron populations
1.69975 1.06119 1.27142 1.49811 1.24968 0.94954 0.99231 0.94756
0.86315 0.80076 0.82657 0.77715 1.19461 1.20746 1.20751 1.20757
0.93452 0.88849 1.52046 0.91516 1.21009 0.93036 0.90143 1.00289
1.86730 1.23086 1.05043 1.96561 1.24463 1.00252 0.97555 0.87112
1.88063 1.38018 1.83961 1.18725 1.22102 0.94353 0.91603 0.89107
1.22053 1.00226 0.96474 0.99071 1.21483 0.99287 0.99779 0.94819
1.21571 1.01472 0.96006 0.96766 1.21491 0.99936 0.95102 0.98851
1.21534 0.99428 1.01658 0.92594 0.92595 0.94098 0.94711 0.87818
0.90346 0.90953 0.92200 0.91457 0.92052 0.91882 0.92014 0.92146
0.91627 0.91694 0.91656 0.90641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16
2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16
3 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16
4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16
5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.51 -14.74 9.13 -34.44 -0.31 -15.05 16
8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16
9 C 0.10 2.73 5.70 36.00 0.21 2.94 16
10 S -0.34 -7.52 21.14 -107.50 -2.27 -9.80 16
11 C 0.09 1.66 6.81 101.05 0.69 2.35 16
12 O -0.37 -6.74 10.09 -35.23 -0.36 -7.09 16
13 C 0.09 1.32 2.38 -26.73 -0.06 1.26 16
14 C -0.14 -1.72 5.52 -26.73 -0.15 -1.87 16
15 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16
16 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16
17 C -0.12 -1.33 5.92 -26.76 -0.16 -1.49 16
18 C -0.11 -1.65 5.57 -26.76 -0.15 -1.79 16
19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
20 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16
21 H 0.03 0.97 8.14 -51.92 -0.42 0.54 16
22 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16
23 H 0.08 1.18 7.64 -51.92 -0.40 0.78 16
24 H 0.07 1.18 7.19 -51.93 -0.37 0.81 16
25 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16
26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
LS Contribution 290.03 15.07 4.37 4.37
Total: -1.00 -29.95 290.03 -8.68 -38.64
By element:
Atomic # 1 Polarization: 3.36 SS G_CDS: -5.79 Total: -2.42 kcal
Atomic # 6 Polarization: -14.26 SS G_CDS: -0.35 Total: -14.62 kcal
Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal
Atomic # 8 Polarization: -6.74 SS G_CDS: -0.36 Total: -7.09 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Atomic # 16 Polarization: -7.52 SS G_CDS: -2.27 Total: -9.80 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -29.95 -8.68 -38.64 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865370786.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.347 kcal
(2) G-P(sol) polarization free energy of solvation -29.954 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds