Wall clock time and date at job start Sun Mar 29 2020 22:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48497 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47306 * 300.00701 * 3 2 1 6 6 H 1.48502 * 109.46996 * 59.99946 * 3 2 1 7 7 C 1.37876 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99993 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.81404 * 102.99864 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.47244 * 74.99917 * 11 10 9 13 13 C 1.42896 * 114.00446 * 74.99674 * 12 11 10 14 14 C 1.52997 * 109.46906 * 89.99887 * 13 12 11 15 15 C 1.52999 * 109.47317 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47159 * 300.00546 * 15 14 13 17 17 C 1.52997 * 109.47452 * 59.99536 * 16 15 14 18 18 C 1.53000 * 109.47231 * 209.99746 * 13 12 11 19 19 H 0.97002 * 119.99472 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47560 * 60.00054 * 9 7 2 21 21 H 1.09001 * 109.46758 * 300.00038 * 9 7 2 22 22 H 1.09000 * 109.47140 * 314.99276 * 11 10 9 23 23 H 1.09005 * 109.46699 * 194.99847 * 11 10 9 24 24 H 1.09002 * 109.46984 * 330.00066 * 13 12 11 25 25 H 1.08996 * 109.47853 * 300.00254 * 14 13 12 26 26 H 1.09002 * 109.47153 * 60.00282 * 14 13 12 27 27 H 1.09000 * 109.47486 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.46716 * 60.00091 * 15 14 13 29 29 H 1.09002 * 109.46935 * 299.99411 * 16 15 14 30 30 H 1.09001 * 109.46812 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47194 * 179.97438 * 17 16 15 32 32 H 1.09002 * 109.46695 * 59.99734 * 17 16 15 33 33 H 1.08992 * 109.47399 * 300.00058 * 18 13 12 34 34 H 1.09004 * 109.46724 * 60.00544 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 6 1.3515 -5.3367 0.0003 12 8 0.7875 -5.5128 -1.3008 13 6 1.7032 -6.0350 -2.2655 14 6 1.6359 -7.5635 -2.2573 15 6 2.6159 -8.1227 -3.2906 16 6 2.2429 -7.6033 -4.6806 17 6 2.3102 -6.0748 -4.6889 18 6 1.3307 -5.5157 -3.6557 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8902 21 1 0.6247 -2.5570 0.8897 22 1 0.5515 -5.1967 0.7272 23 1 1.9339 -6.2188 0.2663 24 1 2.7149 -5.7145 -2.0169 25 1 1.9012 -7.9336 -1.2670 26 1 0.6242 -7.8840 -2.5059 27 1 2.5677 -9.2117 -3.2851 28 1 3.6277 -7.8022 -3.0424 29 1 1.2311 -7.9238 -4.9288 30 1 2.9414 -8.0013 -5.4167 31 1 2.0449 -5.7048 -5.6792 32 1 3.3220 -5.7543 -4.4406 33 1 0.3191 -5.8362 -3.9043 34 1 1.3787 -4.4267 -3.6615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865370786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:33 Heat of formation + Delta-G solvation = -79.983267 kcal Electronic energy + Delta-G solvation = -14173.059852 eV Core-core repulsion = 11809.911946 eV Total energy + Delta-G solvation = -2363.147906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.96469 -36.17872 -33.10573 -30.74569 -29.80875 -28.46070 -26.28255 -22.98872 -22.51032 -22.06312 -19.79548 -16.73180 -16.50820 -15.75909 -15.60893 -14.67165 -14.54552 -14.14819 -13.75206 -13.38258 -12.96737 -12.44738 -12.20948 -12.15558 -12.11906 -11.89910 -11.12485 -10.99922 -10.90060 -10.88062 -10.58111 -10.51462 -10.24606 -9.97411 -9.53608 -9.18136 -8.59456 -8.58635 -6.87850 -6.15423 -4.19526 2.63173 3.26915 3.33962 3.40171 3.80006 3.98581 4.38445 4.75467 4.78037 4.96048 5.21477 5.23120 5.28932 5.40532 5.45785 5.53315 5.58164 5.64423 5.72553 5.81932 6.00272 6.04211 6.15000 6.17609 6.25442 6.45656 6.48661 7.14851 7.23452 7.43470 7.78918 8.05777 8.82433 9.43087 10.95777 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039362 B = 0.005768 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.167019 B = 4853.219656 C = 5146.885362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.102 3.898 10 S -0.338 6.338 11 C 0.093 3.907 12 O -0.369 6.369 13 C 0.087 3.913 14 C -0.140 4.140 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.114 4.114 19 H 0.264 0.736 20 H 0.041 0.959 21 H 0.035 0.965 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.043 -14.258 -6.399 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.045 4.045 10 S -0.114 6.114 11 C -0.094 4.094 12 O -0.288 6.288 13 C 0.028 3.972 14 C -0.178 4.178 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.152 4.152 19 H 0.074 0.926 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.122 0.878 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.786 -14.091 -6.433 15.945 hybrid contribution -0.739 0.785 0.181 1.093 sum 3.047 -13.305 -6.251 15.013 Atomic orbital electron populations 1.69975 1.06119 1.27142 1.49811 1.24968 0.94954 0.99231 0.94756 0.86315 0.80076 0.82657 0.77715 1.19461 1.20746 1.20751 1.20757 0.93452 0.88849 1.52046 0.91516 1.21009 0.93036 0.90143 1.00289 1.86730 1.23086 1.05043 1.96561 1.24463 1.00252 0.97555 0.87112 1.88063 1.38018 1.83961 1.18725 1.22102 0.94353 0.91603 0.89107 1.22053 1.00226 0.96474 0.99071 1.21483 0.99287 0.99779 0.94819 1.21571 1.01472 0.96006 0.96766 1.21491 0.99936 0.95102 0.98851 1.21534 0.99428 1.01658 0.92594 0.92595 0.94098 0.94711 0.87818 0.90346 0.90953 0.92200 0.91457 0.92052 0.91882 0.92014 0.92146 0.91627 0.91694 0.91656 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.74 9.13 -34.44 -0.31 -15.05 16 8 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 9 C 0.10 2.73 5.70 36.00 0.21 2.94 16 10 S -0.34 -7.52 21.14 -107.50 -2.27 -9.80 16 11 C 0.09 1.66 6.81 101.05 0.69 2.35 16 12 O -0.37 -6.74 10.09 -35.23 -0.36 -7.09 16 13 C 0.09 1.32 2.38 -26.73 -0.06 1.26 16 14 C -0.14 -1.72 5.52 -26.73 -0.15 -1.87 16 15 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 16 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 17 C -0.12 -1.33 5.92 -26.76 -0.16 -1.49 16 18 C -0.11 -1.65 5.57 -26.76 -0.15 -1.79 16 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 20 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 21 H 0.03 0.97 8.14 -51.92 -0.42 0.54 16 22 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 23 H 0.08 1.18 7.64 -51.92 -0.40 0.78 16 24 H 0.07 1.18 7.19 -51.93 -0.37 0.81 16 25 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -29.95 290.03 -8.68 -38.64 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.79 Total: -2.42 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.35 Total: -14.62 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.36 Total: -7.09 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -2.27 Total: -9.80 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.95 -8.68 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865370786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.347 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds