Wall clock time and date at job start Sun Mar 29 2020 21:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36686 * 120.00022 * 2 1 4 4 H 1.07997 * 119.99985 * 217.58792 * 3 2 1 5 5 C 1.39162 * 119.99840 * 37.58892 * 3 2 1 6 6 N 1.31297 * 120.00114 * 9.36475 * 5 3 2 7 7 Si 1.86794 * 119.99879 * 189.36367 * 5 3 2 8 8 H 1.48494 * 109.47300 * 90.00334 * 7 5 3 9 9 H 1.48505 * 109.47268 * 209.99984 * 7 5 3 10 10 H 1.48501 * 109.47129 * 329.99973 * 7 5 3 11 11 C 1.34776 * 119.99806 * 179.97438 * 2 1 3 12 12 O 1.21649 * 119.99473 * 184.90519 * 11 2 1 13 13 C 1.47297 * 120.00267 * 4.90584 * 11 2 1 14 14 C 1.36953 * 126.94519 * 174.84438 * 13 11 2 15 15 C 1.41322 * 103.83183 * 179.97438 * 14 13 11 16 16 Cl 1.73600 * 126.70954 * 180.02562 * 15 14 13 17 17 N 1.30265 * 106.57464 * 0.02562 * 15 14 13 18 18 O 1.20883 * 111.98677 * 359.71801 * 17 15 14 19 19 H 1.09002 * 109.47483 * 238.27160 * 1 2 3 20 20 H 1.09004 * 109.47008 * 358.27243 * 1 2 3 21 21 H 1.08995 * 109.47581 * 118.27355 * 1 2 3 22 22 H 0.96993 * 120.00030 * 179.97438 * 6 5 3 23 23 H 1.07996 * 128.08182 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1484 1.1837 0.0000 4 1 3.0602 1.2808 -0.5705 5 6 1.6692 2.2638 0.7352 6 7 0.6702 2.0977 1.5707 7 14 2.4474 3.9499 0.5332 8 1 1.7471 4.6923 -0.5454 9 1 2.3333 4.7037 1.8076 10 1 3.8806 3.7941 0.1769 11 6 2.1388 -1.1672 0.0005 12 8 3.3520 -1.1690 0.0906 13 6 1.4064 -2.4406 -0.1080 14 6 1.9467 -3.6940 -0.2198 15 6 0.8191 -4.5431 -0.2890 16 17 0.8300 -6.2725 -0.4394 17 7 -0.2300 -3.7741 -0.2179 18 8 0.0701 -2.6079 -0.1122 19 1 -0.3634 -0.5404 0.8741 20 1 -0.3633 1.0272 0.0310 21 1 -0.3634 -0.4867 -0.9050 22 1 0.3365 2.8504 2.0834 23 1 2.9906 -3.9693 -0.2476 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874256193.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:43 Heat of formation + Delta-G solvation = 15.235389 kcal Electronic energy + Delta-G solvation = -13774.367068 eV Core-core repulsion = 11038.097915 eV Total energy + Delta-G solvation = -2736.269154 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.16582 -40.38443 -38.22683 -36.94305 -34.76260 -33.99428 -32.82438 -28.38880 -27.11359 -24.65863 -24.47486 -21.91999 -19.44757 -19.01297 -18.68596 -17.48382 -17.05067 -16.12573 -15.85588 -15.80948 -14.83256 -14.70903 -13.86931 -13.82830 -13.47786 -13.36509 -13.23512 -12.73016 -12.49302 -12.18090 -12.08690 -11.15290 -11.03270 -10.96422 -10.85160 -9.69340 -8.46957 -6.21671 -0.31123 0.28933 0.71474 1.45020 1.45542 1.57052 1.65853 2.14133 2.25249 2.75477 2.99755 3.22588 3.67060 3.92316 3.99604 4.63349 4.67725 4.80209 5.24877 5.35926 6.02038 6.26705 6.72074 6.94955 7.14906 7.72423 8.57020 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.074888 B = 0.006388 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.802550 B = 4382.117353 C = 4667.181360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.422 5.422 3 C -0.345 4.345 4 H 0.084 0.916 5 C 0.006 3.994 6 N -0.882 5.882 7 Si 1.000 3.000 8 H -0.260 1.260 9 H -0.274 1.274 10 H -0.270 1.270 11 C 0.503 3.497 12 O -0.595 6.595 13 C -0.039 4.039 14 C -0.161 4.161 15 C 0.062 3.938 16 Cl 0.049 6.951 17 N -0.358 5.358 18 O 0.122 5.878 19 H 0.050 0.950 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.282 0.718 23 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -8.009 -3.166 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.137 5.137 3 C -0.472 4.472 4 H 0.102 0.898 5 C -0.199 4.199 6 N -0.517 5.517 7 Si 0.822 3.178 8 H -0.184 1.184 9 H -0.199 1.199 10 H -0.195 1.195 11 C 0.291 3.709 12 O -0.482 6.482 13 C -0.105 4.105 14 C -0.185 4.185 15 C -0.121 4.121 16 Cl 0.077 6.923 17 N -0.064 5.064 18 O 0.051 5.949 19 H 0.069 0.931 20 H 0.107 0.893 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.205 -8.254 -3.015 9.354 hybrid contribution 0.965 0.358 0.126 1.037 sum -2.240 -7.896 -2.889 8.701 Atomic orbital electron populations 1.21772 0.79248 1.04110 0.99589 1.43659 1.07046 1.04257 1.58776 1.19722 1.10171 0.87690 1.29666 0.89823 1.26433 0.96601 1.04043 0.92860 1.69916 1.25479 1.33969 1.22372 0.84834 0.78711 0.75906 0.78344 1.18421 1.19897 1.19451 1.16984 0.86518 0.81539 0.85864 1.90668 1.13566 1.85713 1.58274 1.24466 0.83066 0.97851 1.05114 1.22813 1.01897 0.88536 1.05265 1.24092 0.90206 0.91058 1.06776 1.98397 1.98363 0.99412 1.96120 1.73765 1.23943 0.90060 1.18588 1.85202 1.22860 1.19934 1.66871 0.93113 0.89300 0.92334 0.90840 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.17 7.98 127.77 1.02 5.19 14 2 N -0.42 -21.33 2.93 -662.84 -1.94 -23.28 14 3 C -0.34 -18.44 8.93 84.16 0.75 -17.69 14 4 H 0.08 4.63 7.75 -2.91 -0.02 4.61 14 5 C 0.01 0.28 5.03 84.99 0.43 0.70 14 6 N -0.88 -44.74 11.23 21.70 0.24 -44.49 14 7 Si 1.00 39.35 29.56 68.60 2.03 41.38 14 8 H -0.26 -9.58 7.11 99.48 0.71 -8.87 14 9 H -0.27 -10.43 7.11 99.48 0.71 -9.72 14 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 14 11 C 0.50 24.81 7.61 86.63 0.66 25.47 14 12 O -0.60 -32.75 16.82 -4.19 -0.07 -32.82 14 13 C -0.04 -1.57 6.97 24.35 0.17 -1.40 14 14 C -0.16 -5.41 10.96 22.73 0.25 -5.16 14 15 C 0.06 1.93 7.96 85.68 0.68 2.61 14 16 Cl 0.05 1.17 29.33 -2.72 -0.08 1.09 14 17 N -0.36 -12.40 12.05 -50.96 -0.61 -13.02 14 18 O 0.12 4.56 8.16 65.46 0.53 5.09 14 19 H 0.05 2.17 7.42 -2.39 -0.02 2.16 14 20 H 0.09 4.07 6.02 -2.39 -0.01 4.06 14 21 H 0.06 2.23 7.32 -2.39 -0.02 2.21 14 22 H 0.28 13.22 8.31 -92.71 -0.77 12.45 14 23 H 0.20 5.94 8.06 -2.91 -0.02 5.92 14 Total: -1.00 -58.88 231.72 5.31 -53.57 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.26 Total: 2.76 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 3.96 Total: 9.72 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.32 Total: -80.79 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: 0.46 Total: -27.73 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 17 Polarization: 1.17 SS G_CDS: -0.08 Total: 1.09 kcal Total: -58.88 5.31 -53.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874256193.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.807 kcal (2) G-P(sol) polarization free energy of solvation -58.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds