Wall clock time and date at job start Sun Mar 29 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46910 * 297.63890 * 3 2 1 5 5 C 1.36935 * 119.99461 * 263.90973 * 4 3 2 6 6 H 1.08005 * 119.99805 * 199.37667 * 5 4 3 7 7 C 1.38808 * 120.00520 * 19.38732 * 5 4 3 8 8 N 1.31621 * 119.99843 * 22.28433 * 7 5 4 9 9 Si 1.86793 * 120.00404 * 202.28799 * 7 5 4 10 10 H 1.48504 * 109.47613 * 59.99618 * 9 7 5 11 11 H 1.48500 * 109.47590 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47172 * 299.99472 * 9 7 5 13 13 C 1.46498 * 120.00411 * 83.91907 * 4 3 2 14 14 C 1.50691 * 109.47555 * 89.99514 * 13 4 3 15 15 C 1.35048 * 125.61924 * 89.99851 * 14 13 4 16 16 C 1.40470 * 107.11426 * 180.02562 * 15 14 13 17 17 C 1.36553 * 106.70589 * 359.97438 * 16 15 14 18 18 C 1.43197 * 125.98723 * 179.97438 * 17 16 15 19 19 N 7.89239 * 144.35962 * 34.19838 * 2 1 3 20 20 O 1.34052 * 125.61776 * 270.02869 * 14 13 4 21 21 H 4.40640 * 5.51356 * 179.97438 * 4 1 2 22 22 H 1.08996 * 109.46963 * 177.63546 * 3 2 1 23 23 H 1.09000 * 109.47176 * 57.63282 * 3 2 1 24 24 H 0.97003 * 120.00183 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.46694 * 329.99203 * 13 4 3 26 26 H 1.09002 * 109.46854 * 210.00120 * 13 4 3 27 27 H 1.08006 * 126.44482 * 0.02826 * 15 14 13 28 28 H 1.08002 * 126.64911 * 179.74452 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.6399 1.2236 5 6 3.4810 0.1250 2.3053 6 1 4.1195 -0.2846 3.0741 7 6 3.0115 1.4268 2.4139 8 7 1.9268 1.7915 1.7637 9 14 3.9191 2.6609 3.4827 10 1 5.3084 2.8212 2.9833 11 1 3.2204 3.9702 3.4295 12 1 3.9503 2.1729 4.8849 13 6 3.2527 -2.0986 1.2900 14 6 4.6250 -2.5132 0.8257 15 6 5.7130 -2.6526 1.6134 16 6 6.7753 -3.0497 0.7846 17 6 6.2740 -3.1339 -0.4828 18 6 7.0078 -3.5058 -1.6549 19 7 7.5880 -3.8037 -2.5848 20 8 4.9671 -2.8038 -0.4375 21 1 -1.0499 0.0001 0.0002 22 1 3.0088 1.0276 -0.0424 23 1 3.0096 -0.5493 -0.8680 24 1 1.5989 2.7013 1.8392 25 1 2.4988 -2.5537 0.6475 26 1 3.1015 -2.4289 2.3177 27 1 5.7580 -2.4894 2.6801 28 1 7.7925 -3.2464 1.0899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878552307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:02 Heat of formation + Delta-G solvation = 118.768571 kcal Electronic energy + Delta-G solvation = -14908.268209 eV Core-core repulsion = 12314.754535 eV Total energy + Delta-G solvation = -2593.513674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.53956 -38.04858 -37.69003 -34.17945 -33.59260 -33.36608 -31.16764 -28.17278 -27.65354 -24.17309 -23.00393 -21.95998 -20.20010 -19.30481 -18.25192 -17.45164 -16.81950 -16.39818 -15.50181 -15.41081 -15.21960 -14.65583 -14.50698 -14.43418 -13.79236 -13.66931 -13.43461 -13.39347 -13.10210 -12.63856 -12.41307 -12.20060 -11.95926 -10.88772 -10.79904 -10.73573 -10.34415 -9.42788 -9.01038 -7.82176 -5.27946 0.07290 0.99335 1.48705 1.54668 1.57875 1.62108 1.99696 2.26651 2.37112 2.54357 2.62238 3.13148 3.35473 3.83726 3.99451 4.06883 4.12686 4.57062 4.73708 4.82442 4.97484 4.99090 5.06768 5.25617 5.56873 5.64481 5.73042 6.12916 6.20421 6.27493 7.06902 7.36679 7.77671 8.20658 9.18933 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.007796 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.097173 B = 3590.658672 C = 4231.227498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.137 4.137 3 C 0.270 3.730 4 N -0.585 5.585 5 C -0.274 4.274 6 H 0.089 0.911 7 C -0.039 4.039 8 N -0.910 5.910 9 Si 0.958 3.042 10 H -0.281 1.281 11 H -0.304 1.304 12 H -0.274 1.274 13 C 0.211 3.789 14 C 0.031 3.969 15 C -0.213 4.213 16 C -0.092 4.092 17 C -0.014 4.014 18 C 0.318 3.682 19 N -0.428 5.428 20 O -0.174 6.174 21 H 0.223 0.777 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.247 0.753 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.173 0.827 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -7.991 0.660 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.139 4.139 3 C 0.145 3.855 4 N -0.304 5.304 5 C -0.403 4.403 6 H 0.107 0.893 7 C -0.236 4.236 8 N -0.553 5.553 9 Si 0.787 3.213 10 H -0.207 1.207 11 H -0.231 1.231 12 H -0.200 1.200 13 C 0.083 3.917 14 C -0.025 4.025 15 C -0.233 4.233 16 C -0.114 4.114 17 C -0.066 4.066 18 C 0.004 3.996 19 N -0.107 5.107 20 O -0.069 6.069 21 H 0.240 0.760 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.190 0.810 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.743 -8.260 -1.005 10.110 hybrid contribution -0.241 1.241 0.846 1.521 sum 5.501 -7.019 -0.159 8.919 Atomic orbital electron populations 1.25002 0.96338 1.04758 1.04127 1.24431 0.95915 0.96743 0.96852 1.17615 0.83154 0.97513 0.87228 1.44202 1.73878 1.00679 1.11661 1.19483 1.24422 0.94847 1.01584 0.89323 1.25581 0.96608 1.00570 1.00834 1.70288 1.20456 1.17658 1.46921 0.85496 0.78319 0.78344 0.79159 1.20723 1.23095 1.19978 1.19622 0.86940 0.83905 1.01187 1.24855 1.00889 0.97079 0.79672 1.21817 0.91223 1.07866 1.02407 1.22234 1.01799 0.98235 0.89166 1.16612 0.83336 1.16170 0.90441 1.23636 0.92977 0.92272 0.90676 1.81288 1.09659 1.11606 1.08123 1.84081 1.24286 1.66700 1.31805 0.76050 0.91667 0.92555 0.94370 0.91431 0.87353 0.80984 0.79242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.09 19.25 74.32 1.43 -10.66 15 2 C -0.14 -6.35 11.50 31.13 0.36 -5.99 15 3 C 0.27 12.28 5.41 84.57 0.46 12.74 15 4 N -0.59 -25.74 2.47 -716.93 -1.77 -27.52 15 5 C -0.27 -13.17 9.63 84.03 0.81 -12.36 15 6 H 0.09 3.98 7.92 -2.91 -0.02 3.96 15 7 C -0.04 -1.97 4.82 84.86 0.41 -1.56 15 8 N -0.91 -49.58 9.61 21.65 0.21 -49.37 15 9 Si 0.96 41.70 29.61 68.60 2.03 43.73 15 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 11 H -0.30 -13.78 7.11 99.48 0.71 -13.08 15 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 13 C 0.21 7.26 6.20 85.63 0.53 7.79 15 14 C 0.03 0.97 6.90 24.95 0.17 1.15 15 15 C -0.21 -5.57 10.77 22.08 0.24 -5.33 15 16 C -0.09 -2.10 10.84 22.42 0.24 -1.86 15 17 C -0.01 -0.37 7.08 23.12 0.16 -0.21 15 18 C 0.32 8.86 15.88 88.33 1.40 10.27 15 19 N -0.43 -12.95 18.54 19.00 0.35 -12.60 15 20 O -0.17 -5.54 10.67 -5.78 -0.06 -5.61 15 21 H 0.22 7.59 7.80 -4.42 -0.03 7.55 15 22 H 0.07 3.32 6.59 -2.39 -0.02 3.30 15 23 H 0.06 2.31 8.12 -2.39 -0.02 2.29 15 24 H 0.25 13.46 8.31 -92.71 -0.77 12.69 15 25 H 0.07 2.24 8.07 -2.39 -0.02 2.22 15 26 H 0.11 3.39 8.04 -2.39 -0.02 3.37 15 27 H 0.17 3.91 8.06 -2.91 -0.02 3.88 15 28 H 0.19 2.91 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -58.54 271.45 8.14 -50.40 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.17 Total: 6.99 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.21 Total: -6.03 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -1.21 Total: -89.49 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.06 Total: -5.61 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -58.54 8.14 -50.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878552307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.167 kcal (2) G-P(sol) polarization free energy of solvation -58.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds