Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47055 * 300.00043 * 3 2 1 6 6 H 1.48504 * 109.47060 * 60.00262 * 3 2 1 7 7 C 1.37876 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99919 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99780 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.47382 * 74.99891 * 11 10 9 13 13 C 1.34223 * 117.00370 * 75.00124 * 12 11 10 14 14 O 1.20830 * 119.99676 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00330 * 179.97438 * 13 12 11 16 16 C 1.53781 * 113.61615 * 179.97438 * 15 13 12 17 17 C 1.53786 * 87.17350 * 219.89494 * 16 15 13 18 18 C 1.53781 * 113.69134 * 82.46277 * 15 13 12 19 19 H 0.97002 * 120.00239 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.46944 * 60.00532 * 9 7 2 21 21 H 1.09003 * 109.47299 * 300.00503 * 9 7 2 22 22 H 1.09001 * 109.47004 * 314.99052 * 11 10 9 23 23 H 1.09004 * 109.46978 * 195.00021 * 11 10 9 24 24 H 1.08999 * 112.84914 * 311.19807 * 15 13 12 25 25 H 1.09002 * 113.61445 * 334.48493 * 16 15 13 26 26 H 1.09002 * 113.61408 * 105.30224 * 16 15 13 27 27 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 28 28 H 1.09000 * 113.60973 * 270.92699 * 17 16 15 29 29 H 1.09005 * 113.61471 * 254.54463 * 18 15 13 30 30 H 1.08996 * 113.61178 * 25.35805 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3516 -5.3366 -0.0013 12 8 0.7794 -5.5149 -1.3238 13 6 1.5886 -6.0023 -2.2773 14 8 2.7372 -6.2707 -2.0157 15 6 1.0645 -6.2148 -3.6742 16 6 2.1143 -6.7772 -4.6471 17 6 1.5321 -5.8255 -5.7055 18 6 1.0651 -4.9404 -4.5349 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.5511 -5.1971 0.7252 23 1 1.9338 -6.2189 0.2646 24 1 0.1176 -6.7542 -3.6935 25 1 3.1408 -6.5419 -4.3657 26 1 1.9710 -7.8319 -4.8821 27 1 2.2888 -5.3565 -6.3344 28 1 0.7130 -6.2592 -6.2792 29 1 0.0737 -4.5113 -4.6805 30 1 1.8038 -4.2026 -4.2219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882177073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = -75.630130 kcal Electronic energy + Delta-G solvation = -13829.243399 eV Core-core repulsion = 11330.451165 eV Total energy + Delta-G solvation = -2498.792234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42056 -38.05056 -35.89733 -33.16439 -28.66057 -28.31398 -26.15233 -25.64367 -23.03937 -21.41727 -19.34290 -17.68350 -16.95210 -16.55159 -16.11772 -15.42340 -14.89519 -14.29929 -14.20698 -13.07421 -12.74254 -12.49320 -12.45678 -12.25397 -12.09050 -12.06399 -11.30941 -11.09268 -10.92230 -10.61572 -10.58456 -10.45685 -10.01753 -9.80837 -9.52616 -8.84077 -8.64250 -6.95454 -6.20868 -4.25307 2.26085 2.69528 2.96009 3.24229 3.31404 3.37995 3.75969 4.34457 4.41319 4.53678 4.73848 4.77243 5.13823 5.16493 5.24689 5.47211 5.55070 5.61924 5.76582 5.84891 5.93580 6.01112 6.36708 6.72684 7.05426 7.11480 7.73650 7.98611 8.06254 8.76771 9.37880 10.90376 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.006636 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.156160 B = 4218.287862 C = 4694.504648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.087 3.913 10 S -0.286 6.286 11 C 0.086 3.914 12 O -0.350 6.350 13 C 0.469 3.531 14 O -0.497 6.497 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.122 4.122 19 H 0.265 0.735 20 H 0.041 0.959 21 H 0.037 0.963 22 H 0.120 0.880 23 H 0.100 0.900 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -11.667 -7.740 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.552 4.552 8 H 0.086 0.914 9 C -0.059 4.059 10 S -0.060 6.060 11 C -0.099 4.099 12 O -0.267 6.267 13 C 0.310 3.690 14 O -0.384 6.384 15 C -0.131 4.131 16 C -0.157 4.157 17 C -0.179 4.179 18 C -0.160 4.160 19 H 0.075 0.925 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.138 0.862 23 H 0.118 0.882 24 H 0.137 0.863 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.643 -11.607 -7.594 13.885 hybrid contribution -0.956 0.843 0.290 1.307 sum -0.313 -10.763 -7.304 13.012 Atomic orbital electron populations 1.69964 1.06124 1.27254 1.49646 1.24961 0.94977 0.99265 0.94609 0.86298 0.80120 0.82504 0.77770 1.19409 1.20686 1.20675 1.20713 0.93493 0.88684 1.52320 0.91438 1.21157 0.93573 0.90780 1.00436 1.87177 1.20594 1.02323 1.95858 1.25039 1.01315 1.00681 0.82821 1.86689 1.44608 1.75233 1.20175 1.23438 0.84699 0.73377 0.87481 1.90633 1.18638 1.47069 1.82057 1.22570 1.01664 1.01467 0.87430 1.22902 0.99265 0.99423 0.94084 1.22867 1.00968 0.97703 0.96325 1.22902 1.03390 0.95243 0.94418 0.92522 0.94101 0.94465 0.86231 0.88215 0.86255 0.88473 0.90867 0.90671 0.89832 0.90115 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.65 9.13 -34.44 -0.31 -14.96 16 8 H 0.07 1.95 7.71 -52.48 -0.40 1.54 16 9 C 0.09 2.31 5.70 36.01 0.21 2.51 16 10 S -0.29 -6.55 21.36 -107.50 -2.30 -8.84 16 11 C 0.09 1.57 6.69 101.05 0.68 2.24 16 12 O -0.35 -6.37 10.32 -39.24 -0.40 -6.78 16 13 C 0.47 8.01 7.24 36.00 0.26 8.28 16 14 O -0.50 -9.69 15.03 -18.75 -0.28 -9.97 16 15 C -0.11 -1.43 4.26 -90.96 -0.39 -1.81 16 16 C -0.12 -1.32 7.40 -25.92 -0.19 -1.51 16 17 C -0.14 -1.37 8.10 -25.80 -0.21 -1.58 16 18 C -0.12 -1.52 7.64 -25.80 -0.20 -1.72 16 19 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 20 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 22 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 23 H 0.10 1.66 7.70 -51.92 -0.40 1.26 16 24 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.10 1.25 7.44 -51.93 -0.39 0.86 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -31.36 276.84 -7.48 -38.84 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.13 Total: -1.85 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.26 Total: -6.80 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.69 Total: -16.75 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -2.30 Total: -8.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.36 -7.48 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.787 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds