Wall clock time and date at job start Sun Mar 29 2020 21:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47055 * 300.00043 * 3 2 1 6 6 H 1.48504 * 109.47060 * 60.00262 * 3 2 1 7 7 C 1.37876 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99919 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99780 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.47382 * 74.99891 * 11 10 9 13 13 C 1.34223 * 117.00370 * 75.00124 * 12 11 10 14 14 O 1.20830 * 119.99676 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00330 * 179.97438 * 13 12 11 16 16 C 1.53781 * 113.61615 * 179.97438 * 15 13 12 17 17 C 1.53786 * 87.17350 * 219.89494 * 16 15 13 18 18 C 1.53781 * 113.69134 * 82.46277 * 15 13 12 19 19 H 0.97002 * 120.00239 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.46944 * 60.00532 * 9 7 2 21 21 H 1.09003 * 109.47299 * 300.00503 * 9 7 2 22 22 H 1.09001 * 109.47004 * 314.99052 * 11 10 9 23 23 H 1.09004 * 109.46978 * 195.00021 * 11 10 9 24 24 H 1.08999 * 112.84914 * 311.19807 * 15 13 12 25 25 H 1.09002 * 113.61445 * 334.48493 * 16 15 13 26 26 H 1.09002 * 113.61408 * 105.30224 * 16 15 13 27 27 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 28 28 H 1.09000 * 113.60973 * 270.92699 * 17 16 15 29 29 H 1.09005 * 113.61471 * 254.54463 * 18 15 13 30 30 H 1.08996 * 113.61178 * 25.35805 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3516 -5.3366 -0.0013 12 8 0.7794 -5.5149 -1.3238 13 6 1.5886 -6.0023 -2.2773 14 8 2.7372 -6.2707 -2.0157 15 6 1.0645 -6.2148 -3.6742 16 6 2.1143 -6.7772 -4.6471 17 6 1.5321 -5.8255 -5.7055 18 6 1.0651 -4.9404 -4.5349 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.5511 -5.1971 0.7252 23 1 1.9338 -6.2189 0.2646 24 1 0.1176 -6.7542 -3.6935 25 1 3.1408 -6.5419 -4.3657 26 1 1.9710 -7.8319 -4.8821 27 1 2.2888 -5.3565 -6.3344 28 1 0.7130 -6.2592 -6.2792 29 1 0.0737 -4.5113 -4.6805 30 1 1.8038 -4.2026 -4.2219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882177073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:21 Heat of formation + Delta-G solvation = -93.623326 kcal Electronic energy + Delta-G solvation = -13830.023643 eV Core-core repulsion = 11330.451165 eV Total energy + Delta-G solvation = -2499.572477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.73417 -39.14101 -37.32607 -35.33422 -30.74538 -29.73980 -27.34021 -26.58504 -25.19269 -22.64691 -20.36389 -18.99652 -18.85792 -18.05899 -17.82247 -16.91043 -16.32016 -15.90975 -15.54295 -14.63837 -14.41150 -14.37625 -14.12646 -13.54139 -13.44740 -13.19342 -12.83376 -12.78456 -12.45495 -12.26253 -11.79684 -11.50958 -11.47268 -11.36810 -11.27882 -10.78796 -10.70236 -8.83777 -8.36521 -6.50346 0.64280 1.24430 1.38358 1.38707 1.53392 1.62690 1.86225 2.34534 2.97887 3.43493 3.57457 3.71523 3.80498 3.86822 4.03498 4.16994 4.64431 4.76138 4.81590 4.87677 4.90754 5.00511 5.07538 5.10246 5.35087 5.48545 5.53293 5.83459 6.56371 6.68065 7.17938 8.75630 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.006636 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.156160 B = 4218.287862 C = 4694.504648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.097 3.903 10 S -0.310 6.310 11 C 0.097 3.903 12 O -0.355 6.355 13 C 0.461 3.539 14 O -0.526 6.526 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.133 4.133 19 H 0.272 0.728 20 H 0.017 0.983 21 H 0.023 0.977 22 H 0.143 0.857 23 H 0.121 0.879 24 H 0.152 0.848 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -12.178 -8.761 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.050 4.050 10 S -0.085 6.085 11 C -0.088 4.088 12 O -0.272 6.272 13 C 0.304 3.696 14 O -0.414 6.414 15 C -0.132 4.132 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.171 4.171 19 H 0.081 0.919 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.160 0.840 23 H 0.138 0.862 24 H 0.170 0.830 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.295 -12.130 -8.624 14.886 hybrid contribution -0.875 0.898 0.599 1.390 sum -0.580 -11.232 -8.024 13.816 Atomic orbital electron populations 1.70051 1.07573 1.28649 1.49726 1.25883 0.95907 1.02914 0.93608 0.85229 0.78599 0.77776 0.78438 1.19260 1.19568 1.19440 1.20982 0.93291 0.90236 1.53382 0.92355 1.20801 0.93648 0.92106 0.98432 1.87071 1.21525 1.03654 1.96201 1.25137 1.01540 0.98371 0.83737 1.86716 1.44843 1.75373 1.20299 1.24464 0.84383 0.72148 0.88574 1.90616 1.19855 1.48348 1.82612 1.22927 1.03587 1.02192 0.84445 1.22902 0.97491 1.01278 0.93839 1.22858 1.01703 0.96035 0.95297 1.22941 1.03059 0.94972 0.96132 0.91897 0.96470 0.95888 0.83958 0.86153 0.83040 0.90909 0.88283 0.90159 0.86823 0.89288 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.98 43.99 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.55 9.13 25.60 0.23 -31.31 16 8 H 0.06 3.44 7.71 -2.91 -0.02 3.42 16 9 C 0.10 5.30 5.70 71.24 0.41 5.71 16 10 S -0.31 -14.45 21.36 -56.49 -1.21 -15.65 16 11 C 0.10 3.45 6.69 113.37 0.76 4.21 16 12 O -0.36 -12.73 10.32 -51.35 -0.53 -13.26 16 13 C 0.46 15.52 7.24 71.23 0.52 16.03 16 14 O -0.53 -20.49 15.03 21.95 0.33 -20.16 16 15 C -0.11 -2.68 4.26 -11.01 -0.05 -2.72 16 16 C -0.12 -2.37 7.40 31.12 0.23 -2.14 16 17 C -0.12 -2.04 8.10 31.20 0.25 -1.79 16 18 C -0.13 -3.20 7.64 31.20 0.24 -2.96 16 19 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 20 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 23 H 0.12 3.84 7.70 -2.39 -0.02 3.82 16 24 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.07 1.84 7.44 -2.39 -0.02 1.82 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 Total: -1.00 -68.43 276.84 5.07 -63.36 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.12 Total: 6.99 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.05 Total: -13.49 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.28 Total: -53.81 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.20 Total: -33.41 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -14.45 SS G_CDS: -1.21 Total: -15.65 kcal Total: -68.43 5.07 -63.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882177073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.268 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds