Wall clock time and date at job start Sun Mar 29 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99568 * 2 1 4 4 C 1.53007 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47245 * 174.99721 * 4 3 2 6 6 N 1.46500 * 109.46778 * 295.00002 * 4 3 2 7 7 C 1.36943 * 119.99878 * 274.99471 * 6 4 3 8 8 H 1.07996 * 119.99698 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99902 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00319 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 59.99967 * 11 9 7 13 13 H 1.48503 * 109.47261 * 300.00148 * 11 9 7 14 14 H 1.48500 * 109.47454 * 180.02562 * 11 9 7 15 15 C 1.52999 * 109.46974 * 54.99546 * 4 3 2 16 16 H 1.09004 * 109.52260 * 299.88002 * 15 4 3 17 17 C 1.53179 * 109.52282 * 179.68759 * 15 4 3 18 18 C 1.53174 * 109.03752 * 183.11280 * 17 15 4 19 19 C 1.53090 * 109.16102 * 56.98338 * 18 17 15 20 20 O 1.42905 * 109.41452 * 302.38963 * 19 18 17 21 21 C 1.42897 * 114.09812 * 61.15738 * 20 19 18 22 22 H 1.09007 * 109.47122 * 299.99855 * 1 2 3 23 23 H 1.08994 * 109.47172 * 60.00472 * 1 2 3 24 24 H 1.09005 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47717 * 60.00203 * 3 2 1 26 26 H 1.08996 * 109.47329 * 299.99723 * 3 2 1 27 27 H 0.97000 * 120.00415 * 94.99419 * 6 4 3 28 28 H 0.97001 * 119.99542 * 359.97438 * 10 9 7 29 29 H 1.08999 * 109.54137 * 302.98840 * 17 15 4 30 30 H 1.09004 * 109.54051 * 63.24540 * 17 15 4 31 31 H 1.08996 * 109.52457 * 297.07688 * 18 17 15 32 32 H 1.08996 * 109.57367 * 176.91504 * 18 17 15 33 33 H 1.09003 * 109.48243 * 182.40950 * 19 18 17 34 34 H 1.08999 * 109.48180 * 62.37425 * 19 18 17 35 35 H 1.09002 * 109.48208 * 178.85878 * 21 20 19 36 36 H 1.09009 * 109.48721 * 58.83217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1767 -0.0903 6 7 3.9766 0.5641 1.2509 7 6 4.1693 1.3346 2.3665 8 1 3.9956 2.3996 2.3238 9 6 4.5868 0.7464 3.5525 10 7 4.7980 -0.5517 3.6047 11 14 4.8490 1.7972 5.0745 12 1 3.5757 2.4703 5.4367 13 1 5.8883 2.8208 4.7963 14 1 5.2919 0.9361 6.2003 15 6 3.9781 0.3199 -1.1825 16 1 3.5373 -0.6730 -1.0926 17 6 5.5055 0.2047 -1.1889 18 6 5.9410 -0.5974 -2.4190 19 6 5.4046 0.0856 -3.6798 20 8 3.9818 0.1885 -3.5956 21 6 3.5175 0.9673 -2.4911 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 4.1323 -0.3925 1.2894 28 1 4.6615 -1.0974 2.8145 29 1 5.9461 1.2009 -1.2282 30 1 5.8363 -0.3062 -0.2846 31 1 5.5408 -1.6092 -2.3546 32 1 7.0293 -0.6381 -2.4619 33 1 5.6752 -0.5041 -4.5558 34 1 5.8368 1.0826 -3.7650 35 1 2.4287 1.0129 -2.5106 36 1 3.9249 1.9760 -2.5607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886905741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:31 Heat of formation + Delta-G solvation = -91.840433 kcal Electronic energy + Delta-G solvation = -17082.086516 eV Core-core repulsion = 14373.390236 eV Total energy + Delta-G solvation = -2708.696280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36174 -37.42738 -35.31879 -33.18149 -32.02742 -29.72663 -27.71636 -25.64766 -24.66217 -23.90236 -22.84519 -20.46011 -19.57401 -17.37536 -16.25335 -15.94382 -15.55546 -15.09371 -14.78835 -14.61446 -14.39099 -13.73028 -13.59978 -13.25596 -12.71465 -12.31890 -12.16544 -11.62892 -11.43861 -11.11600 -10.87521 -10.75008 -10.70132 -10.38838 -10.02039 -9.94864 -9.92454 -9.29094 -9.15545 -8.97351 -8.86579 -6.99018 -6.06439 -3.05383 3.51744 3.55280 3.72942 4.06622 4.37567 4.69003 5.06014 5.10617 5.16678 5.22511 5.41612 5.53994 5.55381 5.64648 5.65967 5.69655 5.71673 5.85303 5.94075 5.96570 6.05044 6.06727 6.21392 6.24281 6.37505 6.47480 6.60113 6.77240 6.90657 7.38314 7.73462 7.81849 8.80128 9.27104 10.13562 10.30116 11.42056 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.008520 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.575406 B = 3285.411783 C = 4051.902152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.041 3.959 4 C 0.193 3.807 5 H 0.061 0.939 6 N -0.722 5.722 7 C -0.332 4.332 8 H 0.062 0.938 9 C -0.044 4.044 10 N -0.942 5.942 11 Si 1.078 2.922 12 H -0.297 1.297 13 H -0.296 1.296 14 H -0.285 1.285 15 C -0.122 4.122 16 H 0.084 0.916 17 C -0.109 4.109 18 C -0.156 4.156 19 C 0.061 3.939 20 O -0.387 6.387 21 C 0.070 3.930 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.370 0.630 28 H 0.257 0.743 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 2.955 -12.377 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.039 4.039 4 C 0.082 3.918 5 H 0.078 0.922 6 N -0.364 5.364 7 C -0.463 4.463 8 H 0.080 0.920 9 C -0.241 4.241 10 N -0.587 5.587 11 Si 0.909 3.091 12 H -0.224 1.224 13 H -0.224 1.224 14 H -0.211 1.211 15 C -0.141 4.141 16 H 0.102 0.898 17 C -0.147 4.147 18 C -0.194 4.194 19 C -0.015 4.015 20 O -0.305 6.305 21 C -0.007 4.007 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.204 0.796 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.176 2.903 -10.867 11.456 hybrid contribution -0.602 0.229 -1.312 1.461 sum -2.777 3.132 -12.179 12.878 Atomic orbital electron populations 1.22640 0.82931 1.01808 0.99034 1.87934 1.17967 1.28279 1.95099 1.23559 0.97862 0.84231 0.98251 1.20179 0.89365 0.95703 0.86569 0.92155 1.42295 1.80777 1.07049 1.06293 1.20009 1.43394 0.92089 0.90768 0.91991 1.25703 0.99899 0.98357 1.00189 1.70853 1.51746 1.04512 1.31610 0.83270 0.75786 0.74093 0.75922 1.22421 1.22357 1.21064 1.21927 0.95973 1.01626 0.94581 0.89788 1.21534 0.95257 1.00103 0.97814 1.22212 1.00732 1.00540 0.95900 1.22540 0.81681 0.99493 0.97829 1.87889 1.21163 1.73328 1.48138 1.22648 0.99400 0.93127 0.85537 0.94649 0.95122 0.90457 0.93394 0.95282 0.79597 0.93212 0.92393 0.90475 0.91313 0.91384 0.89545 0.93605 0.89113 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.28 9.77 -35.23 -0.34 -7.63 16 3 C 0.04 0.76 5.25 37.16 0.19 0.96 16 4 C 0.19 3.88 2.27 -67.93 -0.15 3.72 16 5 H 0.06 1.21 8.08 -51.93 -0.42 0.80 16 6 N -0.72 -18.06 4.43 -53.42 -0.24 -18.29 16 7 C -0.33 -9.24 9.93 -15.06 -0.15 -9.39 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 9 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 10 N -0.94 -29.33 13.70 55.49 0.76 -28.57 16 11 Si 1.08 26.03 29.92 -169.99 -5.09 20.95 16 12 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C -0.12 -2.14 1.82 -90.48 -0.16 -2.30 16 16 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 17 C -0.11 -1.86 5.11 -26.55 -0.14 -1.99 16 18 C -0.16 -2.19 6.14 -26.59 -0.16 -2.35 16 19 C 0.06 0.80 6.84 37.20 0.25 1.05 16 20 O -0.39 -6.00 10.77 -35.23 -0.38 -6.38 16 21 C 0.07 1.07 5.70 37.20 0.21 1.28 16 22 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.46 6.77 -51.93 -0.35 0.11 16 27 H 0.37 9.83 6.45 -40.82 -0.26 9.57 16 28 H 0.26 7.94 6.77 -40.82 -0.28 7.66 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.51 7.59 -51.93 -0.39 1.12 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.34 6.69 -51.93 -0.35 0.99 16 36 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -31.49 288.63 -5.90 -37.40 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.88 Total: 6.95 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.91 Total: -8.77 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.52 Total: -46.86 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.72 Total: -14.01 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.49 -5.90 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886905741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.444 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds