Wall clock time and date at job start Sun Mar 29 2020 21:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99568 * 2 1 4 4 C 1.53007 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47245 * 174.99721 * 4 3 2 6 6 N 1.46500 * 109.46778 * 295.00002 * 4 3 2 7 7 C 1.36943 * 119.99878 * 274.99471 * 6 4 3 8 8 H 1.07996 * 119.99698 * 0.02562 * 7 6 4 9 9 C 1.38809 * 119.99902 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00319 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 59.99967 * 11 9 7 13 13 H 1.48503 * 109.47261 * 300.00148 * 11 9 7 14 14 H 1.48500 * 109.47454 * 180.02562 * 11 9 7 15 15 C 1.52999 * 109.46974 * 54.99546 * 4 3 2 16 16 H 1.09004 * 109.52260 * 299.88002 * 15 4 3 17 17 C 1.53179 * 109.52282 * 179.68759 * 15 4 3 18 18 C 1.53174 * 109.03752 * 183.11280 * 17 15 4 19 19 C 1.53090 * 109.16102 * 56.98338 * 18 17 15 20 20 O 1.42905 * 109.41452 * 302.38963 * 19 18 17 21 21 C 1.42897 * 114.09812 * 61.15738 * 20 19 18 22 22 H 1.09007 * 109.47122 * 299.99855 * 1 2 3 23 23 H 1.08994 * 109.47172 * 60.00472 * 1 2 3 24 24 H 1.09005 * 109.46803 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47717 * 60.00203 * 3 2 1 26 26 H 1.08996 * 109.47329 * 299.99723 * 3 2 1 27 27 H 0.97000 * 120.00415 * 94.99419 * 6 4 3 28 28 H 0.97001 * 119.99542 * 359.97438 * 10 9 7 29 29 H 1.08999 * 109.54137 * 302.98840 * 17 15 4 30 30 H 1.09004 * 109.54051 * 63.24540 * 17 15 4 31 31 H 1.08996 * 109.52457 * 297.07688 * 18 17 15 32 32 H 1.08996 * 109.57367 * 176.91504 * 18 17 15 33 33 H 1.09003 * 109.48243 * 182.40950 * 19 18 17 34 34 H 1.08999 * 109.48180 * 62.37425 * 19 18 17 35 35 H 1.09002 * 109.48208 * 178.85878 * 21 20 19 36 36 H 1.09009 * 109.48721 * 58.83217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9784 2.1767 -0.0903 6 7 3.9766 0.5641 1.2509 7 6 4.1693 1.3346 2.3665 8 1 3.9956 2.3996 2.3238 9 6 4.5868 0.7464 3.5525 10 7 4.7980 -0.5517 3.6047 11 14 4.8490 1.7972 5.0745 12 1 3.5757 2.4703 5.4367 13 1 5.8883 2.8208 4.7963 14 1 5.2919 0.9361 6.2003 15 6 3.9781 0.3199 -1.1825 16 1 3.5373 -0.6730 -1.0926 17 6 5.5055 0.2047 -1.1889 18 6 5.9410 -0.5974 -2.4190 19 6 5.4046 0.0856 -3.6798 20 8 3.9818 0.1885 -3.5956 21 6 3.5175 0.9673 -2.4911 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 4.1323 -0.3925 1.2894 28 1 4.6615 -1.0974 2.8145 29 1 5.9461 1.2009 -1.2282 30 1 5.8363 -0.3062 -0.2846 31 1 5.5408 -1.6092 -2.3546 32 1 7.0293 -0.6381 -2.4619 33 1 5.6752 -0.5041 -4.5558 34 1 5.8368 1.0826 -3.7650 35 1 2.4287 1.0129 -2.5106 36 1 3.9249 1.9760 -2.5607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886905741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:31 Heat of formation + Delta-G solvation = -113.938525 kcal Electronic energy + Delta-G solvation = -17083.044761 eV Core-core repulsion = 14373.390236 eV Total energy + Delta-G solvation = -2709.654525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67163 -38.84107 -36.99107 -34.88818 -33.45105 -31.43659 -29.22588 -26.99709 -26.22131 -25.37764 -24.50647 -21.87758 -21.01326 -19.38844 -17.66001 -17.36787 -16.82430 -16.48581 -16.31577 -16.11414 -15.79878 -15.53976 -15.12195 -14.72470 -14.14931 -13.58118 -13.55656 -13.14520 -12.88029 -12.59625 -12.57817 -12.37171 -12.10575 -11.91076 -11.78404 -11.45382 -11.30225 -11.15173 -10.87700 -10.50911 -10.37427 -9.07922 -8.35208 -5.27572 1.57060 1.67347 1.83297 2.71547 2.95077 3.00468 3.43228 3.64113 3.77306 3.87922 3.98572 4.12713 4.28289 4.33200 4.38773 4.48802 4.49363 4.56779 4.60927 4.69702 4.71923 4.77228 4.82119 4.86946 5.03893 5.12492 5.16084 5.34820 5.45461 5.60543 6.24726 6.36270 6.52248 7.12724 8.02995 8.17797 9.16412 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.008520 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.575406 B = 3285.411783 C = 4051.902152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.048 3.952 4 C 0.186 3.814 5 H 0.063 0.937 6 N -0.734 5.734 7 C -0.324 4.324 8 H 0.067 0.933 9 C -0.107 4.107 10 N -0.976 5.976 11 Si 1.126 2.874 12 H -0.280 1.280 13 H -0.276 1.276 14 H -0.296 1.296 15 C -0.110 4.110 16 H 0.059 0.941 17 C -0.108 4.108 18 C -0.151 4.151 19 C 0.059 3.941 20 O -0.398 6.398 21 C 0.077 3.923 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.358 0.642 28 H 0.242 0.758 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 4.413 -14.023 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.031 4.031 4 C 0.077 3.923 5 H 0.081 0.919 6 N -0.375 5.375 7 C -0.456 4.456 8 H 0.085 0.915 9 C -0.298 4.298 10 N -0.625 5.625 11 Si 0.951 3.049 12 H -0.206 1.206 13 H -0.202 1.202 14 H -0.222 1.222 15 C -0.130 4.130 16 H 0.077 0.923 17 C -0.146 4.146 18 C -0.188 4.188 19 C -0.017 4.017 20 O -0.317 6.317 21 C 0.000 4.000 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.189 0.811 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.544 4.396 -12.573 13.560 hybrid contribution -0.532 -0.229 -0.893 1.064 sum -3.076 4.167 -13.466 14.427 Atomic orbital electron populations 1.22853 0.80697 1.03159 1.00215 1.87897 1.20489 1.28602 1.95321 1.23345 0.96467 0.84336 0.98944 1.20434 0.90509 0.95845 0.85550 0.91935 1.42458 1.81255 1.06352 1.07451 1.20360 1.41099 0.92531 0.91565 0.91462 1.27121 1.00479 0.98633 1.03588 1.70972 1.54725 1.05687 1.31097 0.82648 0.76809 0.73031 0.72385 1.20631 1.20243 1.22184 1.21771 0.96129 0.99991 0.95071 0.92265 1.21474 0.94989 1.00323 0.97799 1.22183 1.01985 0.99569 0.95092 1.22744 0.80382 1.00724 0.97851 1.87882 1.22711 1.73448 1.47673 1.22577 0.99936 0.93546 0.83913 0.94955 0.92325 0.89172 0.95647 0.91443 0.81056 0.94769 0.92035 0.94196 0.92250 0.89477 0.86942 0.92015 0.88413 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.47 9.77 -148.98 -1.46 -16.93 16 3 C 0.05 1.76 5.25 71.98 0.38 2.14 16 4 C 0.19 7.42 2.27 44.99 0.10 7.52 16 5 H 0.06 2.46 8.08 -2.39 -0.02 2.44 16 6 N -0.73 -37.59 4.43 -322.93 -1.43 -39.02 16 7 C -0.32 -18.25 9.93 84.03 0.83 -17.42 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 C -0.11 -6.31 5.50 84.86 0.47 -5.85 16 10 N -0.98 -62.66 13.70 21.65 0.30 -62.36 16 11 Si 1.13 52.66 29.92 68.60 2.05 54.72 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 15 C -0.11 -3.81 1.82 -10.70 -0.02 -3.83 16 16 H 0.06 2.35 7.57 -2.39 -0.02 2.34 16 17 C -0.11 -3.65 5.11 30.71 0.16 -3.50 16 18 C -0.15 -4.00 6.14 30.68 0.19 -3.81 16 19 C 0.06 1.36 6.84 72.01 0.49 1.85 16 20 O -0.40 -11.26 10.77 -148.98 -1.60 -12.87 16 21 C 0.08 2.17 5.70 72.01 0.41 2.58 16 22 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.94 6.77 -2.39 -0.02 1.92 16 27 H 0.36 19.90 6.45 -92.71 -0.60 19.31 16 28 H 0.24 15.69 6.77 -92.71 -0.63 15.06 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.62 7.59 -2.38 -0.02 1.61 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 2.59 6.69 -2.39 -0.02 2.58 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -68.89 288.63 2.70 -66.19 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.59 Total: 28.58 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 4.26 Total: -18.30 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -1.14 Total: -101.39 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -3.06 Total: -29.80 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.05 Total: 54.72 kcal Total: -68.89 2.70 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886905741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.752 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds