Wall clock time and date at job start Sun Mar 29 2020 21:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00509 * 2 1 4 4 C 1.52995 * 109.47741 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47544 * 184.99866 * 4 3 2 6 6 N 1.46499 * 109.47258 * 64.99615 * 4 3 2 7 7 C 1.36935 * 119.99926 * 85.00376 * 6 4 3 8 8 H 1.08005 * 119.99877 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00369 * 179.73019 * 7 6 4 10 10 N 1.31617 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47045 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47426 * 119.99572 * 11 9 7 14 14 H 1.48501 * 109.46833 * 239.99815 * 11 9 7 15 15 C 1.53004 * 109.46864 * 305.00054 * 4 3 2 16 16 H 1.08993 * 109.52390 * 59.99997 * 15 4 3 17 17 C 1.53177 * 109.52212 * 180.12420 * 15 4 3 18 18 C 1.53185 * 109.03277 * 176.82373 * 17 15 4 19 19 C 1.53085 * 109.21320 * 303.10997 * 18 17 15 20 20 O 1.42902 * 109.41313 * 57.58014 * 19 18 17 21 21 C 1.42908 * 114.09404 * 298.83720 * 20 19 18 22 22 H 1.09000 * 109.47040 * 59.99559 * 1 2 3 23 23 H 1.08999 * 109.46978 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46589 * 299.99787 * 1 2 3 25 25 H 1.09004 * 109.47011 * 59.99957 * 3 2 1 26 26 H 1.09005 * 109.46923 * 300.00358 * 3 2 1 27 27 H 0.97005 * 120.00261 * 265.00500 * 6 4 3 28 28 H 0.97004 * 120.00382 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.54682 * 296.75313 * 17 15 4 30 30 H 1.09000 * 109.54545 * 57.01237 * 17 15 4 31 31 H 1.09003 * 109.52444 * 183.17531 * 18 17 15 32 32 H 1.08999 * 109.52330 * 63.05238 * 18 17 15 33 33 H 1.09001 * 109.48549 * 297.59783 * 19 18 17 34 34 H 1.08999 * 109.49447 * 177.56294 * 19 18 17 35 35 H 1.08997 * 109.48288 * 301.17222 * 21 20 19 36 36 H 1.09010 * 109.48231 * 181.14197 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0889 6 7 3.9757 0.5643 -1.2527 7 6 4.1675 1.3350 -2.3682 8 1 3.9939 2.4001 -2.3250 9 6 4.5901 0.7482 -3.5531 10 7 4.8068 -0.5490 -3.6042 11 14 4.8525 1.7996 -5.0746 12 1 4.5428 3.2167 -4.7564 13 1 6.2660 1.6884 -5.5155 14 1 3.9564 1.3296 -6.1615 15 6 3.9790 0.3193 1.1807 16 1 3.5364 -0.6728 1.0919 17 6 5.5061 0.2001 1.1830 18 6 5.9428 -0.6010 2.4135 19 6 5.4103 0.0833 3.6751 20 8 3.9875 0.1887 3.5938 21 6 3.5224 0.9680 2.4900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 4.1313 -0.3924 -1.2916 28 1 5.1025 -0.9591 -4.4321 29 1 5.8333 -0.3123 0.2782 30 1 5.9495 1.1951 1.2205 31 1 7.0313 -0.6427 2.4536 32 1 5.5416 -1.6125 2.3508 33 1 5.8444 1.0797 3.7591 34 1 5.6816 -0.5063 4.5508 35 1 3.9317 1.9759 2.5584 36 1 2.4335 1.0156 2.5116 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886905742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:33 Heat of formation + Delta-G solvation = -113.233905 kcal Electronic energy + Delta-G solvation = -17037.696196 eV Core-core repulsion = 14328.072226 eV Total energy + Delta-G solvation = -2709.623970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57560 -38.74287 -36.76624 -34.66025 -33.37680 -31.58866 -29.24858 -27.00340 -26.27280 -25.29312 -24.40600 -21.70741 -20.92799 -19.18568 -17.50861 -17.26698 -16.74981 -16.51537 -16.20828 -16.03664 -15.62692 -15.39545 -14.98733 -14.61845 -14.05195 -13.48395 -13.38072 -13.24818 -12.97306 -12.74921 -12.54822 -12.31289 -12.09492 -12.02171 -11.83191 -11.64903 -11.30200 -11.12586 -10.87186 -10.42040 -10.30163 -8.96329 -7.90247 -5.17679 1.46768 1.47369 1.56964 2.56694 3.01839 3.09640 3.42645 3.80065 3.87040 3.97049 4.07710 4.23180 4.36814 4.41480 4.47358 4.56024 4.57783 4.67563 4.69963 4.78366 4.79823 4.84259 4.90318 4.95843 5.11929 5.22413 5.25054 5.45974 5.51587 5.57323 6.29676 6.31533 6.46522 7.36998 8.13874 8.38124 9.33503 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.008481 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.614326 B = 3300.547379 C = 4068.712427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.047 3.953 4 C 0.180 3.820 5 H 0.066 0.934 6 N -0.723 5.723 7 C -0.233 4.233 8 H 0.077 0.923 9 C -0.077 4.077 10 N -0.969 5.969 11 Si 0.968 3.032 12 H -0.264 1.264 13 H -0.295 1.295 14 H -0.298 1.298 15 C -0.109 4.109 16 H 0.058 0.942 17 C -0.109 4.109 18 C -0.151 4.151 19 C 0.060 3.940 20 O -0.400 6.400 21 C 0.077 3.923 22 H 0.032 0.968 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.371 0.629 28 H 0.248 0.752 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 4.008 13.954 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.032 4.032 4 C 0.071 3.929 5 H 0.084 0.916 6 N -0.361 5.361 7 C -0.365 4.365 8 H 0.095 0.905 9 C -0.270 4.270 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.189 1.189 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.129 4.129 16 H 0.077 0.923 17 C -0.146 4.146 18 C -0.189 4.189 19 C -0.017 4.017 20 O -0.318 6.318 21 C 0.000 4.000 22 H 0.051 0.949 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.203 0.797 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.878 3.932 13.986 14.811 hybrid contribution 0.134 0.154 -1.700 1.713 sum -2.744 4.085 12.286 13.235 Atomic orbital electron populations 1.22835 0.80881 1.03043 1.00137 1.87915 1.20304 1.28666 1.95301 1.23379 0.96552 0.84297 0.98970 1.20509 0.90515 0.95990 0.85894 0.91642 1.42464 1.79940 1.07201 1.06531 1.19659 1.35503 0.91842 0.89455 0.90492 1.25507 1.03634 0.96878 1.00934 1.69850 1.54769 1.10609 1.26763 0.85136 0.76643 0.78523 0.79860 1.18874 1.22263 1.22558 1.21752 0.96121 1.00017 0.94990 0.92321 1.21478 0.95028 1.00315 0.97809 1.22182 1.01890 0.99596 0.95198 1.22730 0.80442 1.00663 0.97832 1.87878 1.22673 1.73502 1.47792 1.22595 0.99909 0.93533 0.83996 0.94928 0.89334 0.92464 0.91574 0.95435 0.79683 0.94323 0.93865 0.91980 0.89605 0.92361 0.92030 0.87127 0.91879 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.36 9.77 -148.98 -1.46 -16.82 16 3 C 0.05 1.69 5.25 71.98 0.38 2.07 16 4 C 0.18 7.07 2.27 44.99 0.10 7.17 16 5 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 6 N -0.72 -36.71 4.43 -322.94 -1.43 -38.14 16 7 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 10 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 11 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 15 C -0.11 -3.77 1.82 -10.70 -0.02 -3.79 16 16 H 0.06 2.34 7.56 -2.39 -0.02 2.33 16 17 C -0.11 -3.67 5.11 30.72 0.16 -3.51 16 18 C -0.15 -4.05 6.13 30.68 0.19 -3.86 16 19 C 0.06 1.37 6.84 72.01 0.49 1.87 16 20 O -0.40 -11.33 10.77 -148.98 -1.60 -12.94 16 21 C 0.08 2.14 5.71 72.01 0.41 2.55 16 22 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.86 6.77 -2.38 -0.02 1.85 16 26 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.37 21.04 7.61 -92.70 -0.71 20.34 16 28 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.04 1.77 7.57 -2.38 -0.02 1.76 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 2.56 6.69 -2.38 -0.02 2.55 16 Total: -1.00 -66.34 290.32 2.42 -63.92 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.34 Total: 27.06 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.26 Total: -11.51 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -1.15 Total: -98.29 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -3.06 Total: -29.76 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -66.34 2.42 -63.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886905742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.313 kcal (2) G-P(sol) polarization free energy of solvation -66.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds