Wall clock time and date at job start Sun Mar 29 2020 21:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47730 * 2 1 4 4 C 1.53007 * 109.47282 * 120.00628 * 2 1 3 5 5 C 1.50700 * 109.46688 * 294.99675 * 4 2 1 6 6 H 1.08004 * 120.00345 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99787 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99899 * 179.72143 * 7 5 4 9 9 Si 1.86806 * 120.00239 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 269.72872 * 9 7 5 11 11 H 1.48502 * 109.46635 * 29.72371 * 9 7 5 12 12 H 1.48495 * 109.47209 * 149.72923 * 9 7 5 13 13 C 1.53007 * 109.47043 * 240.00119 * 2 1 3 14 14 N 1.46898 * 109.46712 * 65.06749 * 13 2 1 15 15 C 1.46853 * 111.00043 * 199.98280 * 14 13 2 16 16 C 1.53032 * 109.52844 * 174.15958 * 15 14 13 17 17 C 1.53122 * 109.27543 * 59.17592 * 16 15 14 18 18 F 1.39898 * 109.52321 * 182.44120 * 17 16 15 19 19 C 1.53117 * 109.16414 * 302.34980 * 17 16 15 20 20 C 1.46843 * 111.00119 * 75.77381 * 14 13 2 21 21 H 1.09005 * 109.46769 * 305.00584 * 1 2 3 22 22 H 1.08999 * 109.47066 * 65.00303 * 1 2 3 23 23 H 1.08990 * 109.47567 * 185.00808 * 1 2 3 24 24 H 1.09002 * 109.46885 * 174.99714 * 4 2 1 25 25 H 1.08996 * 109.47106 * 54.99470 * 4 2 1 26 26 H 0.97001 * 119.99576 * 180.26689 * 8 7 5 27 27 H 1.08990 * 109.47248 * 185.06638 * 13 2 1 28 28 H 1.08995 * 109.47131 * 305.07036 * 13 2 1 29 29 H 1.08999 * 109.45909 * 294.18138 * 15 14 13 30 30 H 1.09005 * 109.46155 * 54.14382 * 15 14 13 31 31 H 1.09001 * 109.50203 * 299.24026 * 16 15 14 32 32 H 1.08995 * 109.50607 * 179.12057 * 16 15 14 33 33 H 1.09007 * 109.57334 * 62.28518 * 17 16 15 34 34 H 1.09003 * 109.50025 * 297.71526 * 19 17 16 35 35 H 1.09002 * 109.53950 * 177.61608 * 19 17 16 36 36 H 1.08998 * 109.46211 * 305.84896 * 20 14 13 37 37 H 1.08999 * 109.46608 * 65.83287 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3758 7 6 1.9933 -0.4019 3.7282 8 7 1.6501 0.2801 4.7990 9 14 2.9636 -1.9886 3.9026 10 1 2.0244 -3.1322 4.0265 11 1 3.8202 -2.1792 2.7046 12 1 3.8175 -1.9159 5.1153 13 6 2.0399 -0.7213 -1.2493 14 7 1.6527 0.0383 -2.4455 15 6 1.6889 -0.8111 -3.6429 16 6 1.1424 -0.0306 -4.8405 17 6 1.9925 1.2246 -5.0563 18 9 1.4640 1.9708 -6.1151 19 6 1.9772 2.0678 -3.7783 20 6 2.4995 1.2264 -2.6115 21 1 -0.3633 0.5896 0.8418 22 1 -0.3633 0.4343 -0.9314 23 1 -0.3634 -1.0236 0.0897 24 1 3.1263 -0.7996 1.2055 25 1 1.6053 -1.7199 1.2951 26 1 1.9011 -0.0407 5.6794 27 1 3.1261 -0.8005 -1.2051 28 1 1.6044 -1.7193 -1.2959 29 1 2.7172 -1.1117 -3.8439 30 1 1.0771 -1.6980 -3.4777 31 1 0.1096 0.2584 -4.6458 32 1 1.1840 -0.6560 -5.7322 33 1 3.0173 0.9359 -5.2900 34 1 0.9575 2.3898 -3.5670 35 1 2.6148 2.9420 -3.9107 36 1 2.4764 1.8195 -1.6973 37 1 3.5240 0.9164 -2.8176 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895547007.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:01 Heat of formation + Delta-G solvation = -72.789825 kcal Electronic energy + Delta-G solvation = -16424.328564 eV Core-core repulsion = 13728.831170 eV Total energy + Delta-G solvation = -2695.497394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.71977 -38.91514 -35.48930 -32.71417 -31.44547 -31.02383 -27.50243 -25.86840 -23.59089 -23.28590 -21.76345 -20.08590 -18.92433 -16.82186 -16.39971 -16.05293 -15.29367 -15.05569 -14.66373 -14.31266 -14.08164 -13.68501 -13.02353 -12.61497 -12.60622 -12.40579 -12.24158 -11.73606 -11.49748 -11.37459 -11.28143 -10.97086 -10.72088 -10.54723 -10.51388 -10.34713 -9.74232 -9.69940 -9.37960 -9.05752 -8.50929 -8.15074 -6.01147 -3.97977 3.31326 3.38862 3.41879 3.95521 4.39937 4.45222 4.47196 4.53820 4.79502 5.01274 5.19063 5.32223 5.37029 5.42540 5.46584 5.64216 5.71129 5.71859 5.89469 5.93530 5.96997 6.04539 6.16200 6.27045 6.41479 6.61748 6.85029 7.04000 7.13589 7.22626 7.24975 7.35577 7.50534 7.83869 8.58739 9.04994 9.61851 11.12371 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.053968 B = 0.005200 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.704710 B = 5382.917597 C = 5534.573971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.058 3.942 14 N -0.536 5.536 15 C 0.057 3.943 16 C -0.140 4.140 17 C 0.089 3.911 18 F -0.218 7.218 19 C -0.141 4.141 20 C 0.056 3.944 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.262 0.738 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -1.022 -18.543 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.069 4.069 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.178 4.178 17 C 0.053 3.947 18 F -0.198 7.198 19 C -0.179 4.179 20 C -0.072 4.072 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.095 -0.851 -18.313 18.365 hybrid contribution 1.359 -1.111 0.128 1.760 sum 2.454 -1.961 -18.185 18.454 Atomic orbital electron populations 1.21581 0.95338 1.00695 1.00504 1.20997 0.96297 0.99142 0.92442 0.92051 1.19638 0.95664 0.95879 0.93609 1.21129 1.35223 1.09535 0.89063 0.90834 1.25028 0.95674 0.96910 0.95966 1.69918 1.47273 1.39267 0.98025 0.86811 0.80636 0.84427 0.77567 1.20380 1.19178 1.21510 1.22349 0.97751 0.97024 0.89768 1.61939 1.53871 1.07588 1.02626 1.22016 0.99317 0.95981 0.89777 1.22172 1.01254 0.95983 0.98441 1.21666 0.97480 0.91155 0.84396 1.92796 1.88743 1.78863 1.59439 1.22185 1.03973 0.98303 0.93451 1.22057 0.93823 0.92523 0.98784 0.92495 0.93518 0.94299 0.97024 0.97116 0.92849 0.95036 0.91315 0.95029 0.90087 0.89793 0.90764 0.90512 0.89752 0.90601 0.89192 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.87 37.15 0.33 -2.01 16 2 C -0.07 -1.35 2.39 -90.62 -0.22 -1.57 16 3 H 0.06 1.23 6.70 -51.93 -0.35 0.88 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.38 9.02 -34.44 -0.31 -14.69 16 6 H 0.07 2.23 7.31 -52.48 -0.38 1.84 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.06 0.92 4.39 -3.82 -0.02 0.90 16 14 N -0.54 -7.25 3.96 -234.67 -0.93 -8.18 16 15 C 0.06 0.64 5.43 -3.83 -0.02 0.62 16 16 C -0.14 -1.42 5.83 -26.65 -0.16 -1.57 16 17 C 0.09 0.94 3.95 -26.61 -0.10 0.83 16 18 F -0.22 -2.68 17.09 2.25 0.04 -2.64 16 19 C -0.14 -1.55 5.83 -26.65 -0.16 -1.70 16 20 C 0.06 0.70 5.29 -3.83 -0.02 0.68 16 21 H 0.06 1.19 7.10 -51.93 -0.37 0.83 16 22 H 0.05 0.80 7.62 -51.93 -0.40 0.40 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 25 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 28 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.87 7.93 -51.93 -0.41 0.45 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.23 6.65 -51.93 -0.35 0.88 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -29.92 290.51 -7.66 -37.59 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.39 Total: -3.97 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -0.87 Total: -17.07 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.16 Total: -35.35 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.92 -7.66 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895547007.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.200 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds