Wall clock time and date at job start Sun Mar 29 2020 21:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47756 * 2 1 4 4 C 1.53001 * 109.47256 * 239.99322 * 2 1 3 5 5 C 1.50703 * 109.46797 * 65.00453 * 4 2 1 6 6 H 1.07993 * 120.00106 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00317 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99507 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47108 * 90.00622 * 9 7 5 11 11 H 1.48506 * 109.46934 * 210.00201 * 9 7 5 12 12 H 1.48492 * 109.47228 * 329.99902 * 9 7 5 13 13 C 1.53004 * 109.46777 * 119.99623 * 2 1 3 14 14 N 1.46900 * 109.47220 * 296.05176 * 13 2 1 15 15 C 1.47842 * 110.99730 * 173.43059 * 14 13 2 16 16 C 1.54911 * 104.79610 * 146.36629 * 15 14 13 17 17 C 1.55403 * 101.73785 * 323.01731 * 16 15 14 18 18 H 1.09003 * 110.67791 * 277.17461 * 17 16 15 19 19 C 1.53001 * 110.84321 * 153.86273 * 17 16 15 20 20 F 1.39898 * 109.46918 * 186.46489 * 19 17 16 21 21 C 1.47443 * 111.00183 * 294.27313 * 14 13 2 22 22 H 1.09006 * 109.46778 * 64.84684 * 1 2 3 23 23 H 1.08998 * 109.47539 * 184.85058 * 1 2 3 24 24 H 1.09003 * 109.47199 * 304.85536 * 1 2 3 25 25 H 1.09004 * 109.47156 * 185.00510 * 4 2 1 26 26 H 1.08998 * 109.47345 * 305.00252 * 4 2 1 27 27 H 0.96995 * 120.00378 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47100 * 176.05222 * 13 2 1 29 29 H 1.09004 * 109.47111 * 56.05738 * 13 2 1 30 30 H 1.09004 * 110.37425 * 265.19397 * 15 14 13 31 31 H 1.08993 * 110.37888 * 27.53435 * 15 14 13 32 32 H 1.09002 * 110.98970 * 81.01725 * 16 15 14 33 33 H 1.09000 * 110.99325 * 204.80048 * 16 15 14 34 34 H 1.09000 * 109.47233 * 306.46375 * 19 17 16 35 35 H 1.08998 * 109.47390 * 66.46467 * 19 17 16 36 36 H 1.09005 * 109.88844 * 356.14725 * 21 14 13 37 37 H 1.08999 * 109.88806 * 117.16714 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3758 7 6 1.9934 -0.4020 -3.7282 8 7 2.6764 -1.5190 -3.8510 9 14 1.4986 0.5624 -5.2496 10 1 2.5634 1.5425 -5.5823 11 1 1.3123 -0.3718 -6.3889 12 1 0.2269 1.2827 -4.9872 13 6 2.0399 -0.7212 1.2493 14 7 1.6296 0.0242 2.4468 15 6 1.9680 -0.7222 3.6773 16 6 2.3169 0.3699 4.7191 17 6 3.0496 1.4220 3.8410 18 1 4.0965 1.1496 3.7069 19 6 2.9266 2.8201 4.4501 20 9 3.4655 3.7623 3.5675 21 6 2.2890 1.3419 2.5007 22 1 -0.3633 0.4368 -0.9303 23 1 -0.3634 -1.0239 0.0869 24 1 -0.3634 0.5873 0.8433 25 1 3.1263 -0.7997 -1.2054 26 1 1.6054 -1.7199 -1.2950 27 1 2.9237 -1.8421 -4.7315 28 1 3.1276 -0.7829 1.2147 29 1 1.6199 -1.7265 1.2854 30 1 1.1122 -1.3077 4.0134 31 1 2.8274 -1.3698 3.5041 32 1 1.4137 0.7925 5.1592 33 1 2.9776 -0.0241 5.4914 34 1 1.8756 3.0480 4.6275 35 1 3.4701 2.8542 5.3943 36 1 2.9887 1.4406 1.6708 37 1 1.5409 2.1332 2.4509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895574170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:12 Heat of formation + Delta-G solvation = -73.083182 kcal Electronic energy + Delta-G solvation = -16334.882096 eV Core-core repulsion = 13639.371981 eV Total energy + Delta-G solvation = -2695.510115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.65298 -39.06903 -35.40394 -32.73258 -31.38094 -29.25474 -26.85458 -26.22019 -24.67125 -22.66955 -21.01060 -20.51696 -18.56471 -16.84610 -16.29531 -15.86237 -15.64252 -15.20649 -14.45374 -14.28525 -13.84986 -13.39153 -13.04312 -12.76621 -12.32470 -12.22862 -11.63596 -11.49951 -11.35548 -11.18531 -11.04423 -10.82885 -10.75092 -10.69592 -10.54524 -10.23784 -10.17067 -9.61304 -9.09473 -8.91610 -8.29632 -8.01374 -5.94577 -3.95411 3.35617 3.41679 3.45450 4.17251 4.35009 4.40612 4.50731 4.58926 4.85642 5.01876 5.21388 5.39959 5.41240 5.43497 5.57890 5.66092 5.70505 5.79739 5.84180 6.06434 6.10375 6.20101 6.20918 6.43741 6.58030 6.73744 7.05633 7.14014 7.24875 7.33279 7.46356 7.73117 7.88902 8.05844 8.50290 9.10924 9.67818 11.17062 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.005563 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.453112 B = 5032.272679 C = 5468.778685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.056 3.944 14 N -0.526 5.526 15 C 0.041 3.959 16 C -0.120 4.120 17 C -0.147 4.147 18 H 0.084 0.916 19 C 0.075 3.925 20 F -0.217 7.217 21 C 0.050 3.950 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.012 0.988 26 H 0.016 0.984 27 H 0.259 0.741 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 4.259 17.777 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.072 4.072 14 N -0.249 5.249 15 C -0.087 4.087 16 C -0.158 4.158 17 C -0.167 4.167 18 H 0.103 0.897 19 C 0.020 3.980 20 F -0.198 7.198 21 C -0.078 4.078 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.775 4.215 17.576 18.091 hybrid contribution 0.790 0.295 -0.969 1.284 sum 0.015 4.510 16.607 17.209 Atomic orbital electron populations 1.21573 0.95740 1.00245 1.00333 1.21232 0.96019 0.99034 0.93744 0.92649 1.19126 0.95856 0.95586 0.90513 1.21239 1.34485 1.08254 0.90975 0.92559 1.25017 0.95366 0.95083 0.99082 1.69963 1.39222 1.21238 1.23343 0.86631 0.78951 0.79806 0.82848 1.20764 1.21315 1.19869 1.22506 0.97277 0.97502 0.89907 1.63655 1.56527 1.02704 1.02050 1.23015 0.99782 0.95869 0.90023 1.22720 1.00163 0.95620 0.97296 1.23116 1.01252 0.94858 0.97480 0.89735 1.21939 0.99375 0.85701 0.91015 1.92782 1.88259 1.66963 1.71784 1.22828 0.96719 0.92871 0.95421 0.92597 0.94302 0.94135 0.97013 0.96585 0.93132 0.95298 0.91301 0.90297 0.93717 0.90447 0.90859 0.90546 0.91025 0.91788 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.15 0.33 -2.11 16 2 C -0.08 -1.72 2.24 -90.62 -0.20 -1.92 16 3 H 0.06 1.20 6.77 -51.93 -0.35 0.85 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.59 8.34 -34.44 -0.29 -14.87 16 6 H 0.06 1.57 7.08 -52.49 -0.37 1.20 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 0.99 3.93 -3.82 -0.02 0.98 16 14 N -0.53 -7.97 4.69 -231.25 -1.08 -9.05 16 15 C 0.04 0.49 6.72 -2.30 -0.02 0.48 16 16 C -0.12 -1.13 6.54 -24.45 -0.16 -1.29 16 17 C -0.15 -1.61 3.34 -88.66 -0.30 -1.91 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 19 C 0.07 0.72 6.88 37.16 0.26 0.97 16 20 F -0.22 -2.82 17.12 2.25 0.04 -2.79 16 21 C 0.05 0.71 5.49 -2.84 -0.02 0.69 16 22 H 0.06 1.20 6.82 -51.93 -0.35 0.85 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.73 7.86 -51.93 -0.41 0.33 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16 32 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 1.04 6.73 -51.93 -0.35 0.69 16 37 H 0.08 1.10 7.82 -51.93 -0.41 0.70 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -30.58 296.76 -7.90 -38.49 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -6.42 Total: -4.61 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.63 Total: -16.90 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.35 Total: -35.67 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.58 -7.90 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.594 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds