Wall clock time and date at job start Sun Mar 29 2020 21:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47756 * 2 1 4 4 C 1.53001 * 109.47256 * 239.99322 * 2 1 3 5 5 C 1.50703 * 109.46797 * 65.00453 * 4 2 1 6 6 H 1.07993 * 120.00106 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00317 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99507 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47108 * 90.00622 * 9 7 5 11 11 H 1.48506 * 109.46934 * 210.00201 * 9 7 5 12 12 H 1.48492 * 109.47228 * 329.99902 * 9 7 5 13 13 C 1.53004 * 109.46777 * 119.99623 * 2 1 3 14 14 N 1.46900 * 109.47220 * 296.05176 * 13 2 1 15 15 C 1.47842 * 110.99730 * 173.43059 * 14 13 2 16 16 C 1.54911 * 104.79610 * 146.36629 * 15 14 13 17 17 C 1.55403 * 101.73785 * 323.01731 * 16 15 14 18 18 H 1.09003 * 110.67791 * 277.17461 * 17 16 15 19 19 C 1.53001 * 110.84321 * 153.86273 * 17 16 15 20 20 F 1.39898 * 109.46918 * 186.46489 * 19 17 16 21 21 C 1.47443 * 111.00183 * 294.27313 * 14 13 2 22 22 H 1.09006 * 109.46778 * 64.84684 * 1 2 3 23 23 H 1.08998 * 109.47539 * 184.85058 * 1 2 3 24 24 H 1.09003 * 109.47199 * 304.85536 * 1 2 3 25 25 H 1.09004 * 109.47156 * 185.00510 * 4 2 1 26 26 H 1.08998 * 109.47345 * 305.00252 * 4 2 1 27 27 H 0.96995 * 120.00378 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47100 * 176.05222 * 13 2 1 29 29 H 1.09004 * 109.47111 * 56.05738 * 13 2 1 30 30 H 1.09004 * 110.37425 * 265.19397 * 15 14 13 31 31 H 1.08993 * 110.37888 * 27.53435 * 15 14 13 32 32 H 1.09002 * 110.98970 * 81.01725 * 16 15 14 33 33 H 1.09000 * 110.99325 * 204.80048 * 16 15 14 34 34 H 1.09000 * 109.47233 * 306.46375 * 19 17 16 35 35 H 1.08998 * 109.47390 * 66.46467 * 19 17 16 36 36 H 1.09005 * 109.88844 * 356.14725 * 21 14 13 37 37 H 1.08999 * 109.88806 * 117.16714 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3758 7 6 1.9934 -0.4020 -3.7282 8 7 2.6764 -1.5190 -3.8510 9 14 1.4986 0.5624 -5.2496 10 1 2.5634 1.5425 -5.5823 11 1 1.3123 -0.3718 -6.3889 12 1 0.2269 1.2827 -4.9872 13 6 2.0399 -0.7212 1.2493 14 7 1.6296 0.0242 2.4468 15 6 1.9680 -0.7222 3.6773 16 6 2.3169 0.3699 4.7191 17 6 3.0496 1.4220 3.8410 18 1 4.0965 1.1496 3.7069 19 6 2.9266 2.8201 4.4501 20 9 3.4655 3.7623 3.5675 21 6 2.2890 1.3419 2.5007 22 1 -0.3633 0.4368 -0.9303 23 1 -0.3634 -1.0239 0.0869 24 1 -0.3634 0.5873 0.8433 25 1 3.1263 -0.7997 -1.2054 26 1 1.6054 -1.7199 -1.2950 27 1 2.9237 -1.8421 -4.7315 28 1 3.1276 -0.7829 1.2147 29 1 1.6199 -1.7265 1.2854 30 1 1.1122 -1.3077 4.0134 31 1 2.8274 -1.3698 3.5041 32 1 1.4137 0.7925 5.1592 33 1 2.9776 -0.0241 5.4914 34 1 1.8756 3.0480 4.6275 35 1 3.4701 2.8542 5.3943 36 1 2.9887 1.4406 1.6708 37 1 1.5409 2.1332 2.4509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895574170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:12 Heat of formation + Delta-G solvation = -91.610989 kcal Electronic energy + Delta-G solvation = -16335.685522 eV Core-core repulsion = 13639.371981 eV Total energy + Delta-G solvation = -2696.313541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.53892 -40.20661 -37.06230 -34.61465 -32.81876 -30.30727 -28.80393 -27.51380 -26.04985 -24.41803 -21.98846 -21.72144 -20.16319 -18.56058 -17.69095 -16.92183 -16.56591 -16.45561 -16.25119 -15.64155 -15.08682 -14.87709 -14.41032 -14.12212 -13.92792 -13.57797 -13.29015 -13.04427 -12.79400 -12.59316 -12.41803 -12.24804 -12.21703 -11.95089 -11.88309 -11.56073 -11.52576 -11.44562 -11.09015 -10.90594 -10.54771 -9.24234 -8.18861 -6.28171 1.39058 1.40288 1.51516 2.41086 3.04863 3.14389 3.44845 3.56416 3.71967 4.09745 4.15931 4.23724 4.27056 4.39432 4.48911 4.52787 4.59069 4.66087 4.82164 4.85828 4.89669 4.98499 5.00693 5.06443 5.15389 5.25112 5.31253 5.43265 5.48654 5.53960 5.77860 5.86761 6.07716 6.12145 6.30543 6.87116 7.40032 8.93367 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.005563 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.453112 B = 5032.272679 C = 5468.778685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.046 0.954 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.263 1.263 13 C 0.069 3.931 14 N -0.530 5.530 15 C 0.033 3.967 16 C -0.105 4.105 17 C -0.142 4.142 18 H 0.079 0.921 19 C 0.071 3.929 20 F -0.239 7.239 21 C 0.045 3.955 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.062 0.938 25 H -0.017 1.017 26 H -0.008 1.008 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.034 0.966 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 5.185 19.412 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.187 1.187 13 C -0.060 4.060 14 N -0.254 5.254 15 C -0.094 4.094 16 C -0.143 4.143 17 C -0.162 4.162 18 H 0.097 0.903 19 C 0.016 3.984 20 F -0.221 7.221 21 C -0.083 4.083 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.001 0.999 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.579 5.149 19.233 19.973 hybrid contribution 1.055 -0.025 -1.450 1.793 sum -0.524 5.123 17.784 18.514 Atomic orbital electron populations 1.21453 0.94491 1.00575 1.00264 1.21032 0.96887 0.98098 0.93129 0.93517 1.19010 0.93896 0.94813 0.92765 1.21615 1.34511 1.08543 0.92114 0.92296 1.25953 0.95206 0.96090 1.02639 1.70095 1.40278 1.22898 1.24336 0.85496 0.79015 0.78387 0.78475 1.19955 1.20679 1.18742 1.22198 0.96340 0.97340 0.90084 1.63609 1.56645 1.03047 1.02097 1.23178 1.00273 0.96663 0.89270 1.22704 1.01124 0.93816 0.96650 1.23071 1.00589 0.96640 0.95926 0.90271 1.22180 1.00810 0.83959 0.91405 1.92739 1.88693 1.67840 1.72814 1.22832 0.96409 0.92371 0.96659 0.94420 0.94126 0.91873 0.99895 0.98931 0.92883 0.96494 0.91285 0.89118 0.94015 0.88861 0.88188 0.88983 0.87883 0.94783 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 8.89 71.98 0.64 -3.78 16 2 C -0.07 -3.14 2.24 -10.79 -0.02 -3.17 16 3 H 0.05 2.09 6.77 -2.39 -0.02 2.08 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.93 8.34 25.60 0.21 -30.72 16 6 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 9 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.07 2.49 3.93 86.30 0.34 2.83 16 14 N -0.53 -15.55 4.69 -885.54 -4.15 -19.70 16 15 C 0.03 0.73 6.72 86.78 0.58 1.31 16 16 C -0.11 -1.61 6.54 32.07 0.21 -1.40 16 17 C -0.14 -2.83 3.34 -9.52 -0.03 -2.86 16 18 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 19 C 0.07 1.17 6.88 71.98 0.50 1.66 16 20 F -0.24 -5.95 17.12 44.97 0.77 -5.18 16 21 C 0.05 1.27 5.49 86.64 0.48 1.75 16 22 H 0.04 1.61 6.82 -2.38 -0.02 1.60 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 25 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 29 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 0.95 7.81 -2.39 -0.02 0.93 16 32 H 0.09 1.19 8.02 -2.39 -0.02 1.17 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 1.14 6.73 -2.38 -0.02 1.13 16 37 H 0.07 2.09 7.82 -2.39 -0.02 2.07 16 Total: -1.00 -67.23 296.76 3.44 -63.80 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.01 Total: 3.64 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.50 Total: -32.08 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -3.87 Total: -77.68 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.77 Total: -5.18 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.23 3.44 -63.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.815 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds