Wall clock time and date at job start Sun Mar 29 2020 21:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47264 * 2 1 4 4 C 1.53000 * 109.47145 * 240.00116 * 2 1 3 5 5 C 1.50697 * 109.46895 * 64.99940 * 4 2 1 6 6 H 1.07999 * 120.00332 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00037 * 180.27532 * 5 4 2 8 8 N 1.31522 * 119.99660 * 359.72437 * 7 5 4 9 9 Si 1.86799 * 120.00438 * 179.72616 * 7 5 4 10 10 H 1.48497 * 109.46813 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46897 * 119.99421 * 9 7 5 12 12 H 1.48497 * 109.47334 * 239.99999 * 9 7 5 13 13 C 1.53000 * 109.46952 * 120.00423 * 2 1 3 14 14 N 1.46899 * 109.47198 * 185.38344 * 13 2 1 15 15 C 1.47444 * 111.00119 * 75.40042 * 14 13 2 16 16 C 1.54319 * 107.23262 * 123.25668 * 15 14 13 17 17 C 1.55143 * 103.01861 * 22.28561 * 16 15 14 18 18 H 1.09000 * 110.98583 * 82.43850 * 17 16 15 19 19 C 1.52997 * 110.98778 * 206.24974 * 17 16 15 20 20 F 1.39907 * 109.46712 * 183.54435 * 19 17 16 21 21 C 1.47840 * 111.00257 * 196.24303 * 14 13 2 22 22 H 1.08996 * 109.47029 * 184.28543 * 1 2 3 23 23 H 1.08999 * 109.46726 * 304.29109 * 1 2 3 24 24 H 1.09002 * 109.47015 * 64.29005 * 1 2 3 25 25 H 1.08997 * 109.47146 * 305.00421 * 4 2 1 26 26 H 1.08999 * 109.47087 * 185.00425 * 4 2 1 27 27 H 0.97001 * 119.99581 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46836 * 305.38111 * 13 2 1 29 29 H 1.09001 * 109.47623 * 65.38043 * 13 2 1 30 30 H 1.08995 * 109.89222 * 242.67095 * 15 14 13 31 31 H 1.09005 * 109.88911 * 3.85613 * 15 14 13 32 32 H 1.08997 * 110.70191 * 140.67108 * 16 15 14 33 33 H 1.08996 * 110.70553 * 263.90294 * 16 15 14 34 34 H 1.08994 * 109.47875 * 303.54494 * 19 17 16 35 35 H 1.09004 * 109.47199 * 63.55479 * 19 17 16 36 36 H 1.09005 * 110.37353 * 332.47284 * 21 14 13 37 37 H 1.09008 * 110.37462 * 94.80540 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5219 -3.8515 9 14 1.4871 0.5559 -5.2503 10 1 0.7319 1.7682 -4.8439 11 1 2.7021 0.9594 -6.0029 12 1 0.6300 -0.2956 -6.1135 13 6 2.0400 -0.7213 1.2492 14 7 3.5033 -0.6099 1.3160 15 6 3.9113 0.7407 1.7444 16 6 4.7885 0.5755 3.0032 17 6 5.2956 -0.8861 2.8865 18 1 6.1592 -0.9480 2.2244 19 6 5.6217 -1.4647 4.2648 20 9 6.1510 -2.7514 4.1170 21 6 4.0670 -1.5947 2.2637 22 1 -0.3633 -1.0248 0.0768 23 1 -0.3633 0.5790 0.8491 24 1 -0.3633 0.4458 -0.9259 25 1 1.6054 -1.7197 -1.2952 26 1 3.1264 -0.7995 -1.2056 27 1 2.9152 -1.8466 -4.7323 28 1 1.6001 -0.2662 2.1366 29 1 1.7575 -1.7731 1.2023 30 1 4.4851 1.2231 0.9532 31 1 3.0300 1.3364 1.9822 32 1 5.6235 1.2757 2.9856 33 1 4.1937 0.7060 3.9072 34 1 6.3514 -0.8268 4.7633 35 1 4.7120 -1.5127 4.8633 36 1 3.3376 -1.8386 3.0361 37 1 4.3766 -2.4961 1.7347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895574172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:14 Heat of formation + Delta-G solvation = -70.996204 kcal Electronic energy + Delta-G solvation = -16346.224887 eV Core-core repulsion = 13650.805271 eV Total energy + Delta-G solvation = -2695.419617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.66482 -38.98621 -35.39682 -32.59927 -31.34032 -29.28601 -26.99849 -26.21397 -24.20575 -22.78657 -20.89471 -20.55658 -18.57438 -16.71241 -16.25778 -15.82220 -15.69152 -15.16711 -14.49808 -14.22344 -13.52873 -13.37353 -13.25564 -12.70549 -12.21866 -12.02522 -11.80915 -11.58573 -11.34879 -11.13733 -10.87353 -10.80438 -10.79714 -10.63298 -10.60204 -10.25324 -10.08369 -9.61078 -9.04314 -8.80637 -8.20972 -7.79904 -5.85644 -3.85998 3.37572 3.45005 3.48526 4.14183 4.39370 4.56193 4.58601 4.71193 4.83384 5.01509 5.24347 5.41184 5.48007 5.49843 5.62592 5.69817 5.75960 5.78691 5.90462 6.09810 6.11287 6.22757 6.26816 6.35790 6.40426 6.55248 7.01186 7.07501 7.32821 7.40885 7.57635 7.88987 8.10917 8.24666 8.60581 9.22303 9.76011 11.25634 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.005541 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.365906 B = 5051.651304 C = 5319.144688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.060 3.940 14 N -0.516 5.516 15 C 0.045 3.955 16 C -0.134 4.134 17 C -0.134 4.134 18 H 0.097 0.903 19 C 0.074 3.926 20 F -0.218 7.218 21 C 0.050 3.950 22 H 0.043 0.957 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.008 0.992 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 2.675 16.102 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.068 4.068 14 N -0.239 5.239 15 C -0.083 4.083 16 C -0.172 4.172 17 C -0.153 4.153 18 H 0.115 0.885 19 C 0.018 3.982 20 F -0.199 7.199 21 C -0.078 4.078 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.653 2.433 15.461 16.072 hybrid contribution -0.576 0.565 -0.172 0.826 sum 3.077 2.999 15.289 15.881 Atomic orbital electron populations 1.21731 0.96554 1.00374 1.00560 1.21199 0.94062 0.99229 0.95614 0.92697 1.19046 0.97441 0.94472 0.89288 1.21358 1.34238 1.08046 0.91378 0.92951 1.24999 0.95537 0.95081 0.98882 1.69996 1.39351 1.21222 1.22943 0.86655 0.78210 0.80125 0.83696 1.19910 1.21189 1.21226 1.22457 0.85988 1.00828 0.97487 1.63507 1.11011 1.02564 1.46841 1.22835 0.98404 0.91664 0.95361 1.22775 0.99979 0.95497 0.98981 1.22963 1.00261 0.95846 0.96241 0.88492 1.21959 0.99031 0.79616 0.97567 1.92775 1.88485 1.41514 1.97097 1.23070 0.94074 0.96696 0.93931 0.93798 0.95398 0.91565 0.97338 0.94886 0.93336 0.96236 0.91546 0.90244 0.92656 0.90586 0.91577 0.90802 0.90996 0.94067 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.07 37.16 0.34 -2.23 16 2 C -0.08 -1.71 2.38 -90.62 -0.22 -1.93 16 3 H 0.05 1.16 7.45 -51.93 -0.39 0.78 16 4 C 0.03 0.91 4.40 -27.88 -0.12 0.79 16 5 C -0.51 -14.63 8.35 -34.44 -0.29 -14.92 16 6 H 0.05 1.46 7.07 -52.49 -0.37 1.09 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 9 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.06 1.06 3.97 -3.82 -0.02 1.05 16 14 N -0.52 -8.81 4.51 -231.25 -1.04 -9.86 16 15 C 0.05 0.65 6.22 -2.83 -0.02 0.64 16 16 C -0.13 -1.44 6.41 -24.91 -0.16 -1.60 16 17 C -0.13 -1.56 3.37 -88.49 -0.30 -1.86 16 18 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.07 0.71 6.98 37.16 0.26 0.97 16 20 F -0.22 -2.74 17.34 2.25 0.04 -2.70 16 21 C 0.05 0.72 6.09 -2.30 -0.01 0.71 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 1.37 6.84 -51.93 -0.36 1.01 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.94 7.63 -51.93 -0.40 0.55 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.31 7.78 -51.93 -0.40 -0.10 16 29 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.78 7.19 -51.93 -0.37 0.41 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 36 H 0.04 0.54 7.60 -51.93 -0.39 0.15 16 37 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -31.19 297.73 -7.88 -39.07 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.45 Total: -4.32 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.63 Total: -16.86 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.31 Total: -36.75 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.19 -7.88 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.925 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds