Wall clock time and date at job start Sun Mar 29 2020 21:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47264 * 2 1 4 4 C 1.53000 * 109.47145 * 240.00116 * 2 1 3 5 5 C 1.50697 * 109.46895 * 64.99940 * 4 2 1 6 6 H 1.07999 * 120.00332 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00037 * 180.27532 * 5 4 2 8 8 N 1.31522 * 119.99660 * 359.72437 * 7 5 4 9 9 Si 1.86799 * 120.00438 * 179.72616 * 7 5 4 10 10 H 1.48497 * 109.46813 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46897 * 119.99421 * 9 7 5 12 12 H 1.48497 * 109.47334 * 239.99999 * 9 7 5 13 13 C 1.53000 * 109.46952 * 120.00423 * 2 1 3 14 14 N 1.46899 * 109.47198 * 185.38344 * 13 2 1 15 15 C 1.47444 * 111.00119 * 75.40042 * 14 13 2 16 16 C 1.54319 * 107.23262 * 123.25668 * 15 14 13 17 17 C 1.55143 * 103.01861 * 22.28561 * 16 15 14 18 18 H 1.09000 * 110.98583 * 82.43850 * 17 16 15 19 19 C 1.52997 * 110.98778 * 206.24974 * 17 16 15 20 20 F 1.39907 * 109.46712 * 183.54435 * 19 17 16 21 21 C 1.47840 * 111.00257 * 196.24303 * 14 13 2 22 22 H 1.08996 * 109.47029 * 184.28543 * 1 2 3 23 23 H 1.08999 * 109.46726 * 304.29109 * 1 2 3 24 24 H 1.09002 * 109.47015 * 64.29005 * 1 2 3 25 25 H 1.08997 * 109.47146 * 305.00421 * 4 2 1 26 26 H 1.08999 * 109.47087 * 185.00425 * 4 2 1 27 27 H 0.97001 * 119.99581 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46836 * 305.38111 * 13 2 1 29 29 H 1.09001 * 109.47623 * 65.38043 * 13 2 1 30 30 H 1.08995 * 109.89222 * 242.67095 * 15 14 13 31 31 H 1.09005 * 109.88911 * 3.85613 * 15 14 13 32 32 H 1.08997 * 110.70191 * 140.67108 * 16 15 14 33 33 H 1.08996 * 110.70553 * 263.90294 * 16 15 14 34 34 H 1.08994 * 109.47875 * 303.54494 * 19 17 16 35 35 H 1.09004 * 109.47199 * 63.55479 * 19 17 16 36 36 H 1.09005 * 110.37353 * 332.47284 * 21 14 13 37 37 H 1.09008 * 110.37462 * 94.80540 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3756 7 6 1.9879 -0.4048 -3.7286 8 7 2.6711 -1.5219 -3.8515 9 14 1.4871 0.5559 -5.2503 10 1 0.7319 1.7682 -4.8439 11 1 2.7021 0.9594 -6.0029 12 1 0.6300 -0.2956 -6.1135 13 6 2.0400 -0.7213 1.2492 14 7 3.5033 -0.6099 1.3160 15 6 3.9113 0.7407 1.7444 16 6 4.7885 0.5755 3.0032 17 6 5.2956 -0.8861 2.8865 18 1 6.1592 -0.9480 2.2244 19 6 5.6217 -1.4647 4.2648 20 9 6.1510 -2.7514 4.1170 21 6 4.0670 -1.5947 2.2637 22 1 -0.3633 -1.0248 0.0768 23 1 -0.3633 0.5790 0.8491 24 1 -0.3633 0.4458 -0.9259 25 1 1.6054 -1.7197 -1.2952 26 1 3.1264 -0.7995 -1.2056 27 1 2.9152 -1.8466 -4.7323 28 1 1.6001 -0.2662 2.1366 29 1 1.7575 -1.7731 1.2023 30 1 4.4851 1.2231 0.9532 31 1 3.0300 1.3364 1.9822 32 1 5.6235 1.2757 2.9856 33 1 4.1937 0.7060 3.9072 34 1 6.3514 -0.8268 4.7633 35 1 4.7120 -1.5127 4.8633 36 1 3.3376 -1.8386 3.0361 37 1 4.3766 -2.4961 1.7347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895574172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:14 Heat of formation + Delta-G solvation = -90.160081 kcal Electronic energy + Delta-G solvation = -16347.055895 eV Core-core repulsion = 13650.805271 eV Total energy + Delta-G solvation = -2696.250625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.53526 -40.16688 -37.02559 -34.53419 -32.78474 -30.33231 -29.02971 -27.43282 -25.51518 -24.63408 -22.15842 -21.56617 -20.18145 -18.50211 -17.59713 -16.94610 -16.57605 -16.53085 -16.15931 -15.51369 -14.98643 -14.81574 -14.34284 -14.23910 -13.91655 -13.62411 -13.22184 -12.97534 -12.76761 -12.59331 -12.58520 -12.26866 -12.16626 -11.93060 -11.77340 -11.60834 -11.46826 -11.43582 -10.95445 -10.86038 -10.47936 -9.06140 -8.11735 -6.20657 1.39878 1.40252 1.53120 2.44556 3.03501 3.21117 3.47440 3.66400 3.73235 4.09642 4.15577 4.22268 4.30878 4.34298 4.44789 4.55475 4.66790 4.68670 4.76821 4.79938 4.86202 4.93779 4.95418 5.02237 5.19481 5.29366 5.35088 5.45658 5.51109 5.67120 5.92845 6.02119 6.19833 6.30128 6.37747 6.98424 7.46759 9.00339 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036244 B = 0.005541 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.365906 B = 5051.651304 C = 5319.144688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.051 0.949 4 C 0.045 3.955 5 C -0.527 4.527 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.070 3.930 14 N -0.553 5.553 15 C 0.040 3.960 16 C -0.118 4.118 17 C -0.129 4.129 18 H 0.080 0.920 19 C 0.074 3.926 20 F -0.237 7.237 21 C 0.048 3.952 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.045 0.955 25 H -0.025 1.025 26 H -0.002 1.002 27 H 0.259 0.741 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 4.349 17.755 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.095 4.095 3 H 0.070 0.930 4 C 0.008 3.992 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.058 4.058 14 N -0.277 5.277 15 C -0.087 4.087 16 C -0.156 4.156 17 C -0.148 4.148 18 H 0.099 0.901 19 C 0.019 3.981 20 F -0.218 7.218 21 C -0.080 4.080 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.064 0.936 25 H -0.006 1.006 26 H 0.016 0.984 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.115 4.119 17.130 17.891 hybrid contribution -0.392 0.021 -0.707 0.809 sum 2.722 4.139 16.423 17.154 Atomic orbital electron populations 1.21650 0.94908 1.00928 1.01158 1.21057 0.95437 0.98455 0.94522 0.93036 1.18849 0.95067 0.93329 0.91931 1.21768 1.33963 1.08308 0.92435 0.92364 1.25952 0.95457 0.96091 1.02607 1.70148 1.40686 1.23098 1.23891 0.85492 0.78005 0.78931 0.79179 1.18473 1.20706 1.20607 1.22245 0.86839 0.99850 0.96844 1.63332 1.10690 1.04568 1.49097 1.22845 0.99134 0.90152 0.96582 1.22708 1.00127 0.94876 0.97892 1.22902 0.98288 0.96451 0.97180 0.90122 1.22142 1.00805 0.78846 0.96320 1.92740 1.88867 1.43108 1.97132 1.23054 0.95697 0.95540 0.93687 0.93791 0.91589 0.93581 1.00616 0.98353 0.93194 0.93146 0.92683 0.92403 0.92012 0.88687 0.89008 0.87818 0.89002 0.92435 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.07 71.98 0.65 -4.11 16 2 C -0.08 -3.16 2.38 -10.79 -0.03 -3.19 16 3 H 0.05 2.17 7.45 -2.39 -0.02 2.15 16 4 C 0.05 2.49 4.40 29.85 0.13 2.62 16 5 C -0.53 -30.73 8.35 25.60 0.21 -30.52 16 6 H 0.06 3.26 7.07 -2.91 -0.02 3.24 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 9 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.07 2.44 3.97 86.30 0.34 2.78 16 14 N -0.55 -18.97 4.51 -885.54 -3.99 -22.96 16 15 C 0.04 1.12 6.22 86.65 0.54 1.66 16 16 C -0.12 -2.19 6.41 31.78 0.20 -1.99 16 17 C -0.13 -2.80 3.37 -9.41 -0.03 -2.83 16 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 19 C 0.07 1.21 6.98 71.98 0.50 1.71 16 20 F -0.24 -5.66 17.34 44.97 0.78 -4.88 16 21 C 0.05 1.36 6.09 86.77 0.53 1.89 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.86 6.84 -2.39 -0.02 1.85 16 25 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 26 H 0.00 -0.12 7.63 -2.39 -0.02 -0.14 16 27 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.05 1.45 7.78 -2.39 -0.02 1.43 16 29 H 0.05 2.01 8.00 -2.39 -0.02 1.99 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.61 7.19 -2.38 -0.02 1.59 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.18 8.00 -2.38 -0.02 1.16 16 36 H 0.06 1.43 7.60 -2.38 -0.02 1.41 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -69.78 297.73 3.63 -66.15 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.01 Total: 4.99 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.52 Total: -31.77 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -3.71 Total: -82.27 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.78 3.63 -66.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.007 kcal (2) G-P(sol) polarization free energy of solvation -69.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds