Wall clock time and date at job start Sun Mar 29 2020 21:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.52998 * 109.46865 * 119.99733 * 2 1 3 5 5 C 1.50691 * 109.47366 * 294.99912 * 4 2 1 6 6 H 1.08005 * 120.00239 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00376 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99683 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00525 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47126 * 89.99996 * 9 7 5 11 11 H 1.48500 * 109.47314 * 210.00311 * 9 7 5 12 12 H 1.48501 * 109.46684 * 330.00149 * 9 7 5 13 13 C 1.52999 * 109.47314 * 239.99892 * 2 1 3 14 14 N 1.46907 * 109.46903 * 64.99803 * 13 2 1 15 15 C 1.47887 * 111.01481 * 69.12508 * 14 13 2 16 16 C 1.54908 * 104.77420 * 146.33028 * 15 14 13 17 17 C 1.55138 * 101.68619 * 322.97931 * 16 15 14 18 18 H 1.09003 * 110.70516 * 277.25131 * 17 16 15 19 19 C 1.53003 * 110.70598 * 154.02265 * 17 16 15 20 20 F 1.39900 * 109.46982 * 181.45423 * 19 17 16 21 21 C 1.47444 * 110.99660 * 190.00196 * 14 13 2 22 22 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 299.99819 * 1 2 3 24 24 H 1.09001 * 109.47067 * 60.00246 * 1 2 3 25 25 H 1.08996 * 109.47101 * 55.00691 * 4 2 1 26 26 H 1.09008 * 109.46684 * 175.00246 * 4 2 1 27 27 H 0.96996 * 119.99959 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.47195 * 305.00247 * 13 2 1 29 29 H 1.08994 * 109.47178 * 184.99528 * 13 2 1 30 30 H 1.08993 * 110.35657 * 27.51601 * 15 14 13 31 31 H 1.09005 * 110.40536 * 265.16436 * 15 14 13 32 32 H 1.09002 * 110.99023 * 204.86730 * 16 15 14 33 33 H 1.08995 * 110.99233 * 81.08878 * 16 15 14 34 34 H 1.08998 * 109.46819 * 301.44924 * 19 17 16 35 35 H 1.08991 * 109.47347 * 61.45006 * 19 17 16 36 36 H 1.08998 * 109.89066 * 117.34098 * 21 14 13 37 37 H 1.08993 * 110.02675 * 356.21988 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6754 -1.5192 3.8512 9 14 1.4975 0.5622 5.2497 10 1 0.1701 0.0939 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0076 4.9169 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3933 1.3141 -2.5283 16 6 2.5977 1.5547 -4.0449 17 6 2.8433 0.1127 -4.5616 18 1 3.8846 -0.1759 -4.4181 19 6 2.4445 -0.0098 -6.0336 20 9 2.6450 -1.3260 -6.4631 21 6 1.9135 -0.7387 -3.6716 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6055 -1.7197 1.2951 26 1 3.1264 -0.7994 1.2056 27 1 2.9227 -1.8421 4.7318 28 1 1.6055 -1.7199 -1.2951 29 1 3.1264 -0.7994 -1.2056 30 1 3.3560 1.2264 -2.0248 31 1 1.8077 2.1229 -2.0912 32 1 3.4663 2.1878 -4.2262 33 1 1.7032 1.9841 -4.4961 34 1 1.3930 0.2536 -6.1482 35 1 3.0555 0.6651 -6.6330 36 1 0.9770 -0.9340 -4.1941 37 1 2.4011 -1.6804 -3.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895574183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:18 Heat of formation + Delta-G solvation = -73.811445 kcal Electronic energy + Delta-G solvation = -16208.274343 eV Core-core repulsion = 13512.732648 eV Total energy + Delta-G solvation = -2695.541695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.74289 -39.07272 -35.43584 -32.75003 -31.29672 -29.40916 -26.96961 -26.10872 -24.55487 -22.77741 -21.09374 -20.37748 -18.82832 -16.67979 -16.30975 -15.90584 -15.71217 -15.14909 -14.51908 -14.30321 -14.03679 -13.26647 -13.04185 -12.81126 -12.52019 -12.11477 -11.62045 -11.57897 -11.34591 -11.13566 -11.01298 -10.81532 -10.79647 -10.76651 -10.65674 -10.25885 -10.17942 -9.61792 -9.10075 -8.92578 -8.30859 -8.01811 -5.95693 -3.96707 3.34279 3.40448 3.43677 4.15656 4.31877 4.36352 4.49829 4.57816 4.80387 5.00251 5.24113 5.37511 5.39741 5.40725 5.48502 5.67626 5.69863 5.82357 5.90941 6.00983 6.10712 6.16886 6.20384 6.42839 6.56846 6.73227 7.05084 7.13092 7.22668 7.32184 7.45647 7.71837 7.88083 8.04794 8.49086 9.09731 9.66571 11.15933 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.058384 B = 0.004684 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.472122 B = 5976.203581 C = 6112.076263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.055 3.945 14 N -0.526 5.526 15 C 0.044 3.956 16 C -0.121 4.121 17 C -0.146 4.146 18 H 0.085 0.915 19 C 0.074 3.926 20 F -0.219 7.219 21 C 0.048 3.952 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 4.668 -17.530 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.072 4.072 14 N -0.250 5.250 15 C -0.083 4.083 16 C -0.160 4.160 17 C -0.166 4.166 18 H 0.103 0.897 19 C 0.019 3.981 20 F -0.200 7.200 21 C -0.080 4.080 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.675 4.608 -17.351 17.966 hybrid contribution 0.742 0.136 0.918 1.188 sum 0.066 4.745 -16.433 17.105 Atomic orbital electron populations 1.21577 0.95783 1.00480 1.00109 1.21180 0.95950 0.99002 0.93686 0.92729 1.19133 0.95857 0.95591 0.90537 1.21235 1.34493 1.08272 0.90974 0.92584 1.25022 0.95345 0.95104 0.99080 1.69969 1.39142 1.21292 1.23334 0.86632 0.78226 0.80427 0.82952 1.20713 1.21335 1.19917 1.22547 0.97504 0.97212 0.89941 1.63639 1.55434 1.04057 1.01837 1.23034 0.97190 0.93332 0.94767 1.22704 1.02024 0.94868 0.96363 1.23053 1.01240 0.97684 0.94601 0.89677 1.21977 1.02493 0.79158 0.94493 1.92766 1.96798 1.39295 1.91181 1.22839 0.98152 0.96042 0.90963 0.94253 0.92820 0.93941 0.96608 0.97017 0.93123 0.91377 0.95227 0.93290 0.89969 0.90758 0.90458 0.90466 0.90904 0.90700 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.65 2.33 -90.62 -0.21 -1.86 16 3 H 0.05 1.15 7.34 -51.93 -0.38 0.77 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.99 3.96 -3.82 -0.02 0.98 16 14 N -0.53 -7.93 4.62 -231.21 -1.07 -9.00 16 15 C 0.04 0.59 5.72 -2.27 -0.01 0.58 16 16 C -0.12 -1.20 6.52 -24.59 -0.16 -1.36 16 17 C -0.15 -1.52 3.30 -88.80 -0.29 -1.81 16 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.07 0.65 6.84 37.16 0.25 0.90 16 20 F -0.22 -2.56 17.23 2.25 0.04 -2.52 16 21 C 0.05 0.62 6.34 -2.83 -0.02 0.60 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 24 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 30 H 0.05 0.69 7.62 -51.93 -0.40 0.30 16 31 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 37 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -30.27 297.58 -7.93 -38.20 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -6.46 Total: -4.72 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.64 Total: -16.76 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.33 Total: -35.49 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.27 -7.93 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.615 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds