Wall clock time and date at job start Sun Mar 29 2020 21:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.52998 * 109.46865 * 119.99733 * 2 1 3 5 5 C 1.50691 * 109.47366 * 294.99912 * 4 2 1 6 6 H 1.08005 * 120.00239 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00376 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99683 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00525 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47126 * 89.99996 * 9 7 5 11 11 H 1.48500 * 109.47314 * 210.00311 * 9 7 5 12 12 H 1.48501 * 109.46684 * 330.00149 * 9 7 5 13 13 C 1.52999 * 109.47314 * 239.99892 * 2 1 3 14 14 N 1.46907 * 109.46903 * 64.99803 * 13 2 1 15 15 C 1.47887 * 111.01481 * 69.12508 * 14 13 2 16 16 C 1.54908 * 104.77420 * 146.33028 * 15 14 13 17 17 C 1.55138 * 101.68619 * 322.97931 * 16 15 14 18 18 H 1.09003 * 110.70516 * 277.25131 * 17 16 15 19 19 C 1.53003 * 110.70598 * 154.02265 * 17 16 15 20 20 F 1.39900 * 109.46982 * 181.45423 * 19 17 16 21 21 C 1.47444 * 110.99660 * 190.00196 * 14 13 2 22 22 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 299.99819 * 1 2 3 24 24 H 1.09001 * 109.47067 * 60.00246 * 1 2 3 25 25 H 1.08996 * 109.47101 * 55.00691 * 4 2 1 26 26 H 1.09008 * 109.46684 * 175.00246 * 4 2 1 27 27 H 0.96996 * 119.99959 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.47195 * 305.00247 * 13 2 1 29 29 H 1.08994 * 109.47178 * 184.99528 * 13 2 1 30 30 H 1.08993 * 110.35657 * 27.51601 * 15 14 13 31 31 H 1.09005 * 110.40536 * 265.16436 * 15 14 13 32 32 H 1.09002 * 110.99023 * 204.86730 * 16 15 14 33 33 H 1.08995 * 110.99233 * 81.08878 * 16 15 14 34 34 H 1.08998 * 109.46819 * 301.44924 * 19 17 16 35 35 H 1.08991 * 109.47347 * 61.45006 * 19 17 16 36 36 H 1.08998 * 109.89066 * 117.34098 * 21 14 13 37 37 H 1.08993 * 110.02675 * 356.21988 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6754 -1.5192 3.8512 9 14 1.4975 0.5622 5.2497 10 1 0.1701 0.0939 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0076 4.9169 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3933 1.3141 -2.5283 16 6 2.5977 1.5547 -4.0449 17 6 2.8433 0.1127 -4.5616 18 1 3.8846 -0.1759 -4.4181 19 6 2.4445 -0.0098 -6.0336 20 9 2.6450 -1.3260 -6.4631 21 6 1.9135 -0.7387 -3.6716 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6055 -1.7197 1.2951 26 1 3.1264 -0.7994 1.2056 27 1 2.9227 -1.8421 4.7318 28 1 1.6055 -1.7199 -1.2951 29 1 3.1264 -0.7994 -1.2056 30 1 3.3560 1.2264 -2.0248 31 1 1.8077 2.1229 -2.0912 32 1 3.4663 2.1878 -4.2262 33 1 1.7032 1.9841 -4.4961 34 1 1.3930 0.2536 -6.1482 35 1 3.0555 0.6651 -6.6330 36 1 0.9770 -0.9340 -4.1941 37 1 2.4011 -1.6804 -3.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895574183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:17 Heat of formation + Delta-G solvation = -91.825740 kcal Electronic energy + Delta-G solvation = -16209.055501 eV Core-core repulsion = 13512.732648 eV Total energy + Delta-G solvation = -2696.322853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.53252 -40.19655 -37.07719 -34.61682 -32.74950 -30.38414 -28.91724 -27.43407 -25.85554 -24.48272 -22.25970 -21.33358 -20.47298 -18.53537 -17.44539 -16.93303 -16.56119 -16.46647 -16.23775 -15.69235 -15.23821 -14.55094 -14.49798 -14.30342 -13.84738 -13.67031 -13.27294 -12.95569 -12.75111 -12.60093 -12.41381 -12.30012 -12.19591 -11.92731 -11.90886 -11.59960 -11.55514 -11.41287 -11.08092 -10.87226 -10.53982 -9.24806 -8.17834 -6.27342 1.40168 1.41476 1.52386 2.41927 3.03711 3.15597 3.44047 3.56095 3.73005 4.07914 4.17375 4.24018 4.27497 4.38465 4.49673 4.53392 4.58076 4.64795 4.82181 4.87743 4.91288 4.96377 5.00016 5.06817 5.15488 5.26567 5.31142 5.45556 5.49119 5.54898 5.78710 5.87709 6.08262 6.10703 6.30972 6.88451 7.41119 8.94461 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.058384 B = 0.004684 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.472122 B = 5976.203581 C = 6112.076263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.068 3.932 14 N -0.530 5.530 15 C 0.035 3.965 16 C -0.107 4.107 17 C -0.141 4.141 18 H 0.079 0.921 19 C 0.073 3.927 20 F -0.237 7.237 21 C 0.043 3.957 22 H 0.034 0.966 23 H 0.039 0.961 24 H 0.066 0.934 25 H -0.012 1.012 26 H -0.017 1.017 27 H 0.262 0.738 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 6.453 -18.742 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.186 1.186 13 C -0.060 4.060 14 N -0.254 5.254 15 C -0.092 4.092 16 C -0.145 4.145 17 C -0.160 4.160 18 H 0.097 0.903 19 C 0.018 3.982 20 F -0.219 7.219 21 C -0.084 4.084 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.007 0.993 26 H 0.002 0.998 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.384 6.404 -18.585 19.706 hybrid contribution 0.977 -0.445 1.276 1.667 sum -0.407 5.960 -17.309 18.311 Atomic orbital electron populations 1.21467 0.94607 1.00310 1.00517 1.20977 0.96754 0.98363 0.92739 0.92843 1.19025 0.93935 0.94700 0.92918 1.21623 1.34422 1.08595 0.91999 0.92042 1.25970 0.95194 0.96100 1.02700 1.70109 1.40320 1.23040 1.24289 0.85485 0.78006 0.79308 0.78501 1.19857 1.20910 1.18639 1.22244 0.96557 0.96905 0.90313 1.63586 1.55765 1.04599 1.01418 1.23137 0.96207 0.92274 0.97585 1.22665 1.03800 0.94751 0.93276 1.23001 1.00217 0.97418 0.95407 0.90264 1.22149 1.04094 0.78571 0.93343 1.92734 1.96962 1.40899 1.91273 1.22911 0.99196 0.95806 0.90534 0.94706 0.94238 0.91509 0.99312 0.99829 0.92939 0.92013 0.96355 0.94714 0.90093 0.88624 0.88733 0.88887 0.88152 0.89886 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -2.94 2.33 -10.79 -0.03 -2.96 16 3 H 0.05 2.27 7.34 -2.39 -0.02 2.25 16 4 C 0.03 1.72 4.45 29.84 0.13 1.85 16 5 C -0.53 -30.36 8.41 25.60 0.22 -30.14 16 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 13 C 0.07 2.47 3.96 86.30 0.34 2.82 16 14 N -0.53 -15.48 4.62 -885.42 -4.09 -19.57 16 15 C 0.04 0.89 5.72 86.77 0.50 1.39 16 16 C -0.11 -1.77 6.52 31.98 0.21 -1.57 16 17 C -0.14 -2.60 3.30 -9.61 -0.03 -2.63 16 18 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 19 C 0.07 1.06 6.84 71.98 0.49 1.55 16 20 F -0.24 -5.08 17.23 44.97 0.77 -4.30 16 21 C 0.04 1.06 6.34 86.65 0.55 1.61 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 24 H 0.07 2.28 7.75 -2.39 -0.02 2.27 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.06 2.29 8.03 -2.38 -0.02 2.27 16 29 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 30 H 0.03 0.97 7.62 -2.39 -0.02 0.95 16 31 H 0.08 2.05 8.12 -2.38 -0.02 2.03 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.30 8.05 -2.39 -0.02 1.28 16 34 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.92 7.79 -2.39 -0.02 1.90 16 37 H 0.04 1.16 7.56 -2.39 -0.02 1.15 16 Total: -1.00 -65.92 297.58 3.49 -62.43 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.01 Total: 3.88 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.48 Total: -31.52 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.80 Total: -77.37 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.77 Total: -4.30 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.92 3.49 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895574183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.398 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds