Wall clock time and date at job start Sun Mar 29 2020 22:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48498 * 109.46713 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46869 * 300.00081 * 3 2 1 6 6 H 1.48500 * 109.47124 * 59.99998 * 3 2 1 7 7 C 1.37875 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47000 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47149 * 180.02562 * 10 9 7 12 12 S 1.81405 * 109.47189 * 180.02562 * 11 10 9 13 13 C 1.81396 * 103.00203 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47360 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.42902 * 114.00186 * 180.02562 * 15 14 13 17 17 C 1.52995 * 117.49622 * 218.61892 * 16 15 14 18 18 C 1.52994 * 117.49857 * 149.99662 * 16 15 14 19 19 H 0.96993 * 120.00403 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47022 * 60.00571 * 9 7 2 21 21 H 1.08992 * 109.47877 * 300.00172 * 9 7 2 22 22 H 1.09001 * 109.46996 * 60.00000 * 10 9 7 23 23 H 1.09004 * 109.47303 * 300.00174 * 10 9 7 24 24 H 1.09001 * 109.47046 * 60.00552 * 11 10 9 25 25 H 1.08992 * 109.47704 * 300.00244 * 11 10 9 26 26 H 1.09002 * 109.47134 * 59.99960 * 13 12 11 27 27 H 1.08998 * 109.46953 * 300.00697 * 13 12 11 28 28 H 1.09002 * 109.47153 * 59.99820 * 14 13 12 29 29 H 1.09001 * 109.46832 * 300.00011 * 14 13 12 30 30 H 1.09002 * 115.54532 * 4.32983 * 16 15 14 31 31 H 1.08997 * 117.50686 * 0.02562 * 17 16 15 32 32 H 1.09003 * 117.49393 * 145.01845 * 17 16 15 33 33 H 1.08998 * 117.50151 * 214.98095 * 18 16 15 34 34 H 1.08998 * 117.49984 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 16 2.6593 -6.3658 -0.0032 13 6 1.5811 -7.8246 -0.0047 14 6 2.4380 -9.0921 -0.0048 15 8 1.5886 -10.2413 -0.0066 16 6 2.2930 -11.4847 -0.0063 17 6 1.7197 -12.6215 -0.8547 18 6 1.6176 -12.6789 0.6708 19 1 -0.4850 0.8399 -0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8896 22 1 2.8727 -3.6046 0.8877 23 1 2.8714 -3.6038 -0.8923 24 1 0.8535 -5.0442 -0.8923 25 1 0.8542 -5.0455 0.8876 26 1 0.9522 -7.8107 -0.8949 27 1 0.9516 -7.8120 0.8850 28 1 3.0666 -9.1058 0.8855 29 1 3.0677 -9.1048 -0.8945 30 1 3.3778 -11.4104 0.0695 31 1 0.8056 -12.4210 -1.4135 32 1 2.4275 -13.2953 -1.3375 33 1 2.2581 -13.3906 1.1916 34 1 0.6363 -12.5162 1.1163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902575711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:18 Heat of formation + Delta-G solvation = -58.561866 kcal Electronic energy + Delta-G solvation = -12971.134187 eV Core-core repulsion = 10608.915183 eV Total energy + Delta-G solvation = -2362.219004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56223 -36.38257 -36.22870 -34.05906 -31.99876 -29.44207 -25.57207 -24.11139 -23.30047 -22.93063 -21.99702 -18.57165 -18.31450 -17.04367 -16.90904 -16.53578 -16.15882 -16.13477 -15.38318 -14.52411 -14.43439 -14.27775 -13.87098 -13.51074 -13.40941 -12.80912 -12.77611 -12.46299 -12.42568 -12.32740 -12.09187 -11.66316 -11.49582 -11.35445 -11.16686 -10.95260 -10.57526 -10.13683 -8.73239 -8.21889 -6.32931 0.47547 1.40529 1.40740 1.53556 1.54908 2.40813 2.59825 2.89843 3.11705 3.78530 3.81771 3.88376 4.01503 4.05081 4.07596 4.29869 4.35093 4.48354 4.56885 4.64051 4.75366 4.77686 4.80485 4.95608 5.00855 5.12643 5.22403 5.48523 5.67135 5.81589 6.17118 6.21423 6.83175 7.36474 8.90205 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.112347 B = 0.003111 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 249.168665 B = 8998.100729 C = 9142.627715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.067 4.067 12 S -0.269 6.269 13 C -0.084 4.084 14 C 0.089 3.911 15 O -0.377 6.377 16 C -0.003 4.003 17 C -0.187 4.187 18 C -0.181 4.181 19 H 0.264 0.736 20 H -0.003 1.003 21 H -0.003 1.003 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -22.904 -0.026 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.215 4.215 12 S -0.042 6.042 13 C -0.233 4.233 14 C 0.012 3.988 15 O -0.296 6.296 16 C -0.061 4.061 17 C -0.224 4.224 18 C -0.218 4.218 19 H 0.073 0.927 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.777 -22.771 -0.026 23.492 hybrid contribution -1.206 1.029 -0.011 1.585 sum 4.571 -21.742 -0.037 22.217 Atomic orbital electron populations 1.70091 1.07764 1.27818 1.51655 1.25981 0.95800 1.03385 0.94656 0.85381 0.79054 0.78671 0.77847 1.18641 1.20286 1.20275 1.21695 0.93597 0.92264 1.50604 0.92189 1.18991 0.94203 0.92410 0.95328 1.21178 0.98039 0.91262 1.01497 1.23391 0.98773 0.94353 1.05004 1.86630 1.18076 1.01270 1.98232 1.23167 1.00382 0.93439 1.06279 1.22074 0.91772 0.82817 1.02171 1.87771 1.33940 1.13394 1.94544 1.22986 0.96001 0.80645 1.06496 1.23474 1.04011 1.00780 0.94147 1.23432 1.03207 0.99565 0.95617 0.92681 0.98488 0.98478 0.92392 0.92401 0.90041 0.90040 0.89226 0.89203 0.91401 0.91479 0.85408 0.89058 0.86209 0.86079 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.08 -3.38 5.16 30.59 0.16 -3.22 16 11 C -0.07 -2.30 5.94 71.98 0.43 -1.87 16 12 S -0.27 -7.92 21.74 -56.49 -1.23 -9.15 16 13 C -0.08 -2.00 6.31 71.98 0.45 -1.55 16 14 C 0.09 1.83 5.82 71.98 0.42 2.25 16 15 O -0.38 -8.35 10.60 -148.98 -1.58 -9.93 16 16 C 0.00 -0.06 6.44 30.59 0.20 0.14 16 17 C -0.19 -2.55 10.48 30.59 0.32 -2.23 16 18 C -0.18 -2.46 10.48 30.59 0.32 -2.14 16 19 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 20 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 21 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 24 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 1.59 7.93 -2.39 -0.02 1.57 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.81 304.61 3.68 -60.13 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.04 Total: 6.44 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.14 Total: -37.41 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.53 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.58 Total: -9.93 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.23 Total: -9.15 kcal Total: -63.81 3.68 -60.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902575711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.566 kcal (2) G-P(sol) polarization free energy of solvation -63.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds