Wall clock time and date at job start Sun Mar 29 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.52447 * 304.86588 * 14 12 11 16 16 C 1.53139 * 109.52676 * 64.99682 * 14 12 11 17 17 O 1.43077 * 109.15435 * 175.21473 * 16 14 12 18 18 C 1.43077 * 113.59133 * 302.04656 * 17 16 14 19 19 C 1.53147 * 109.14822 * 57.95240 * 18 17 16 20 20 O 1.43077 * 109.14977 * 304.68379 * 19 18 17 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09000 * 109.52833 * 295.11722 * 16 14 12 27 27 H 1.09004 * 109.52435 * 55.24793 * 16 14 12 28 28 H 1.08996 * 109.52639 * 177.85025 * 18 17 16 29 29 H 1.09000 * 109.52631 * 297.98617 * 18 17 16 30 30 H 1.08993 * 109.52623 * 64.58813 * 19 18 17 31 31 H 1.09000 * 109.52270 * 184.78700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4735 -2.6366 0.0001 12 6 6.0829 -3.8325 -0.0003 13 8 5.4248 -4.8458 -0.0002 14 6 7.5878 -3.9114 0.0003 15 1 7.9827 -3.3435 -0.8421 16 6 8.1303 -3.3297 1.3089 17 8 9.5492 -3.5097 1.3501 18 6 9.9564 -4.8768 1.2397 19 6 9.4139 -5.4585 -0.0690 20 8 7.9950 -5.2785 -0.1101 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 3.6585 -3.1502 0.8903 25 1 3.6578 -3.1505 -0.8897 26 1 7.8965 -2.2663 1.3596 27 1 7.6723 -3.8441 2.1538 28 1 11.0448 -4.9339 1.2401 29 1 9.5615 -5.4438 2.0828 30 1 9.8710 -4.9434 -0.9138 31 1 9.6477 -6.5219 -0.1196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915415780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:12 Heat of formation + Delta-G solvation = -177.080543 kcal Electronic energy + Delta-G solvation = -16036.161527 eV Core-core repulsion = 13090.217202 eV Total energy + Delta-G solvation = -2945.944325 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72896 -39.46422 -36.61371 -35.96760 -33.38809 -32.19856 -30.74289 -28.59396 -25.75804 -24.87736 -22.38609 -20.93738 -20.60738 -17.93815 -17.21750 -17.08414 -16.74128 -16.30093 -15.98014 -15.64032 -15.35495 -14.35235 -14.16400 -13.78343 -13.41770 -12.97810 -12.59264 -12.45296 -11.93511 -11.54592 -11.37419 -11.17288 -10.93155 -10.74129 -10.52304 -10.01057 -9.94050 -9.76983 -9.53506 -9.38087 -8.65063 -6.15409 -4.17159 2.29748 2.42371 3.26165 3.33739 3.35126 3.37369 3.75923 4.18719 4.36145 4.58167 4.65894 4.71184 4.77756 4.98579 5.16480 5.18032 5.26571 5.40493 5.49019 5.88585 5.91014 6.37861 6.55743 6.57560 6.68570 7.12238 7.16806 7.58718 7.99990 8.36558 8.86036 9.43738 10.97093 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.052460 B = 0.005086 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.610941 B = 5503.558666 C = 5894.021217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.083 3.917 11 O -0.357 6.357 12 C 0.464 3.536 13 O -0.488 6.488 14 C 0.064 3.936 15 H 0.107 0.893 16 C 0.039 3.961 17 O -0.372 6.372 18 C 0.018 3.982 19 C 0.025 3.975 20 O -0.355 6.355 21 H 0.266 0.734 22 H 0.029 0.971 23 H 0.025 0.975 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.566 -6.992 1.322 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.011 3.989 11 O -0.274 6.274 12 C 0.304 3.696 13 O -0.375 6.375 14 C 0.005 3.995 15 H 0.124 0.876 16 C -0.038 4.038 17 O -0.290 6.290 18 C -0.058 4.058 19 C -0.051 4.051 20 O -0.274 6.274 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.142 0.858 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.143 -7.163 1.327 21.420 hybrid contribution 0.189 0.678 -0.098 0.711 sum 20.333 -6.485 1.229 21.377 Atomic orbital electron populations 1.69893 1.06301 1.27262 1.49949 1.24932 0.94763 0.99187 0.94067 0.86747 0.80415 0.83254 0.78766 1.20030 1.21139 1.18743 1.20828 0.88189 0.95100 1.52588 0.90610 1.19640 0.97060 0.89935 0.98001 1.23486 0.71489 1.01856 1.02093 1.86450 1.26779 1.31189 1.82972 1.22623 0.90057 0.82757 0.74169 1.90678 1.66591 1.36583 1.43607 1.22064 0.90305 0.85928 1.01226 0.87568 1.23161 0.81693 1.03768 0.95194 1.88146 1.21273 1.25370 1.94211 1.23335 1.01292 0.83593 0.97625 1.23367 0.81056 1.03004 0.97703 1.88196 1.22008 1.22672 1.94496 0.92382 0.95259 0.95703 0.91429 0.91445 0.85799 0.91232 0.87366 0.91717 0.91607 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 10 C 0.08 1.75 5.40 37.16 0.20 1.95 16 11 O -0.36 -6.56 10.21 -39.24 -0.40 -6.96 16 12 C 0.46 7.97 7.29 36.01 0.26 8.23 16 13 O -0.49 -10.00 16.26 -25.45 -0.41 -10.41 16 14 C 0.06 0.84 3.37 -27.81 -0.09 0.75 16 15 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.04 0.44 6.31 37.23 0.24 0.68 16 17 O -0.37 -4.04 10.85 -48.80 -0.53 -4.57 16 18 C 0.02 0.15 7.05 37.23 0.26 0.41 16 19 C 0.03 0.22 7.05 37.23 0.26 0.48 16 20 O -0.35 -4.75 10.03 -62.53 -0.63 -5.38 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 23 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 24 H 0.07 1.43 8.13 -51.93 -0.42 1.00 16 25 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 26 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -32.79 269.89 -5.38 -38.17 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.16 Total: -3.93 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.58 Total: -1.08 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.77 Total: -26.39 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.97 Total: -27.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.79 -5.38 -38.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915415780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.913 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds