Wall clock time and date at job start Sun Mar 29 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.52447 * 304.86588 * 14 12 11 16 16 C 1.53139 * 109.52676 * 64.99682 * 14 12 11 17 17 O 1.43077 * 109.15435 * 175.21473 * 16 14 12 18 18 C 1.43077 * 113.59133 * 302.04656 * 17 16 14 19 19 C 1.53147 * 109.14822 * 57.95240 * 18 17 16 20 20 O 1.43077 * 109.14977 * 304.68379 * 19 18 17 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 25 25 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 26 26 H 1.09000 * 109.52833 * 295.11722 * 16 14 12 27 27 H 1.09004 * 109.52435 * 55.24793 * 16 14 12 28 28 H 1.08996 * 109.52639 * 177.85025 * 18 17 16 29 29 H 1.09000 * 109.52631 * 297.98617 * 18 17 16 30 30 H 1.08993 * 109.52623 * 64.58813 * 19 18 17 31 31 H 1.09000 * 109.52270 * 184.78700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4735 -2.6366 0.0001 12 6 6.0829 -3.8325 -0.0003 13 8 5.4248 -4.8458 -0.0002 14 6 7.5878 -3.9114 0.0003 15 1 7.9827 -3.3435 -0.8421 16 6 8.1303 -3.3297 1.3089 17 8 9.5492 -3.5097 1.3501 18 6 9.9564 -4.8768 1.2397 19 6 9.4139 -5.4585 -0.0690 20 8 7.9950 -5.2785 -0.1101 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 3.6585 -3.1502 0.8903 25 1 3.6578 -3.1505 -0.8897 26 1 7.8965 -2.2663 1.3596 27 1 7.6723 -3.8441 2.1538 28 1 11.0448 -4.9339 1.2401 29 1 9.5615 -5.4438 2.0828 30 1 9.8710 -4.9434 -0.9138 31 1 9.6477 -6.5219 -0.1196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915415780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:12 Heat of formation + Delta-G solvation = -199.844660 kcal Electronic energy + Delta-G solvation = -16037.148653 eV Core-core repulsion = 13090.217202 eV Total energy + Delta-G solvation = -2946.931451 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.92867 -40.57187 -37.92203 -37.05930 -35.42213 -33.31322 -32.50151 -29.48231 -27.33046 -26.10347 -23.44751 -22.60334 -21.94278 -19.41098 -18.69640 -18.27833 -18.06206 -17.42294 -16.99668 -16.75812 -16.32832 -16.30553 -15.39978 -15.07623 -14.69450 -14.56607 -14.07818 -13.47574 -13.22087 -13.17347 -12.69983 -12.52952 -12.48831 -11.99563 -11.81557 -11.75662 -11.56143 -11.49063 -11.26639 -10.80999 -10.36598 -8.34097 -6.42907 0.93649 1.17891 1.39912 1.41602 1.54121 2.35208 2.56136 2.82369 3.01055 3.30345 3.49205 3.75628 3.92027 4.11286 4.14375 4.15469 4.20981 4.45743 4.55344 4.59367 4.77324 4.80013 4.97227 5.28187 5.40547 5.50854 5.75178 5.84995 6.15221 6.56478 6.63591 7.22377 8.82047 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.052460 B = 0.005086 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.610941 B = 5503.558666 C = 5894.021217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.545 4.545 8 H 0.034 0.966 9 C -0.003 4.003 10 C 0.093 3.907 11 O -0.349 6.349 12 C 0.464 3.536 13 O -0.526 6.526 14 C 0.072 3.928 15 H 0.131 0.869 16 C 0.044 3.956 17 O -0.379 6.379 18 C 0.014 3.986 19 C 0.020 3.980 20 O -0.386 6.386 21 H 0.271 0.729 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.134 0.866 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.622 -5.975 1.319 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.164 1.164 7 C -0.583 4.583 8 H 0.052 0.948 9 C -0.040 4.040 10 C 0.019 3.981 11 O -0.266 6.266 12 C 0.306 3.694 13 O -0.415 6.415 14 C 0.013 3.987 15 H 0.148 0.852 16 C -0.033 4.033 17 O -0.298 6.298 18 C -0.062 4.062 19 C -0.056 4.056 20 O -0.306 6.306 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.152 0.848 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.238 -6.166 1.326 24.079 hybrid contribution -0.737 0.202 -0.103 0.771 sum 22.501 -5.964 1.223 23.310 Atomic orbital electron populations 1.70046 1.08429 1.28667 1.51336 1.25966 0.95652 1.03652 0.93344 0.85591 0.79636 0.77508 0.79562 1.18806 1.20737 1.16363 1.21118 0.90778 0.93793 1.52561 0.94771 1.19478 0.94059 0.91649 0.98849 1.23058 0.73396 1.00196 1.01405 1.86431 1.24871 1.32132 1.83148 1.23555 0.91817 0.81564 0.72416 1.90664 1.67781 1.37615 1.45425 1.22121 0.86681 0.86701 1.03156 0.85215 1.23109 0.82227 1.04126 0.93864 1.88143 1.20428 1.27053 1.94132 1.23578 1.03102 0.82246 0.97302 1.23696 0.78586 1.04753 0.98535 1.88156 1.24985 1.22649 1.94772 0.92042 0.94157 0.94449 0.92175 0.92340 0.84803 0.91825 0.84246 0.91793 0.90165 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.96 42.65 27.47 68.60 1.88 44.53 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 9 C 0.00 -0.14 4.42 29.85 0.13 0.00 16 10 C 0.09 3.90 5.40 71.98 0.39 4.29 16 11 O -0.35 -12.40 10.21 -51.34 -0.52 -12.92 16 12 C 0.46 15.57 7.29 71.24 0.52 16.08 16 13 O -0.53 -21.71 16.26 28.39 0.46 -21.25 16 14 C 0.07 1.76 3.37 29.90 0.10 1.86 16 15 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 16 C 0.04 0.91 6.31 72.03 0.45 1.36 16 17 O -0.38 -7.14 10.85 -136.01 -1.48 -8.62 16 18 C 0.01 0.18 7.05 72.03 0.51 0.69 16 19 C 0.02 0.28 7.05 72.03 0.51 0.79 16 20 O -0.39 -9.66 10.03 -122.88 -1.23 -10.89 16 21 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 22 H 0.04 1.79 7.20 -2.39 -0.02 1.77 16 23 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 24 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 25 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 26 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.64 269.89 3.80 -67.85 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.06 Total: 4.30 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.32 Total: -4.78 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.30 Total: -58.23 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -2.77 Total: -53.68 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -71.64 3.80 -67.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915415780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.995 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds