Wall clock time and date at job start Sun Mar 29 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21509 * 120.00133 * 0.02562 * 12 11 10 14 14 O 1.34636 * 119.99877 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00136 * 180.02562 * 14 12 11 16 16 H 1.09004 * 110.70513 * 31.88803 * 15 14 12 17 17 C 1.55127 * 110.79622 * 155.44033 * 15 14 12 18 18 N 1.48764 * 101.66075 * 153.59469 * 17 15 14 19 19 O 1.47048 * 105.56224 * 322.76245 * 18 17 15 20 20 C 1.43486 * 108.98650 * 25.03382 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 1.08998 * 110.98911 * 271.68201 * 17 15 14 28 28 H 1.09000 * 110.99445 * 35.50254 * 17 15 14 29 29 H 1.00902 * 110.99838 * 83.12633 * 18 17 15 30 30 H 1.08998 * 110.03808 * 239.22121 * 20 19 18 31 31 H 1.09004 * 110.03253 * 117.78809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4019 -6.0980 0.0023 14 8 1.5136 -7.2640 0.0018 15 6 2.3044 -8.4818 0.0031 16 1 3.2400 -8.3332 0.5424 17 6 1.4977 -9.6617 0.6058 18 7 2.1339 -10.8311 -0.0581 19 8 2.4366 -10.3906 -1.4280 20 6 2.5735 -8.9623 -1.4395 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 0.5429 -4.9308 0.0011 27 1 1.6252 -9.7098 1.6872 28 1 0.4428 -9.5889 0.3414 29 1 2.9742 -11.1091 0.4265 30 1 1.8455 -8.5228 -2.1213 31 1 3.5836 -8.6865 -1.7426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921907819.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:55 Heat of formation + Delta-G solvation = -81.448955 kcal Electronic energy + Delta-G solvation = -15686.735193 eV Core-core repulsion = 12777.230516 eV Total energy + Delta-G solvation = -2909.504677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57210 -38.85727 -36.50631 -35.00937 -32.99829 -32.41294 -30.30674 -29.37807 -25.10588 -24.34306 -22.57909 -21.27765 -20.84064 -18.71495 -17.83942 -17.11140 -16.37411 -16.01579 -15.67997 -14.82937 -14.72521 -14.43449 -13.99567 -13.88174 -13.38032 -12.80568 -12.58726 -12.35171 -12.20497 -11.32851 -11.11668 -10.83593 -10.72866 -10.53676 -10.48971 -10.43641 -9.75047 -9.66104 -9.39517 -8.78171 -8.47348 -6.15880 -4.19817 2.14642 2.56486 2.97517 3.27199 3.31542 3.34381 3.88036 4.05600 4.14615 4.36150 4.49946 4.75159 4.90442 5.19357 5.21279 5.32410 5.43944 6.03503 6.10008 6.17531 6.31822 6.45975 6.56568 6.65792 7.40764 7.50239 7.73904 7.81276 8.17240 8.52329 8.85523 9.45444 10.95600 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.084585 B = 0.004007 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.949668 B = 6986.735441 C = 7110.829876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.137 3.863 11 N -0.695 5.695 12 C 0.637 3.363 13 O -0.578 6.578 14 O -0.357 6.357 15 C 0.063 3.937 16 H 0.104 0.896 17 C 0.014 3.986 18 N -0.470 5.470 19 O -0.219 6.219 20 C 0.001 3.999 21 H 0.264 0.736 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.406 0.594 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.345 0.655 30 H 0.091 0.909 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -16.433 1.327 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.352 5.352 12 C 0.389 3.611 13 O -0.468 6.468 14 O -0.271 6.271 15 C 0.003 3.997 16 H 0.122 0.878 17 C -0.116 4.116 18 N -0.137 5.137 19 O -0.228 6.228 20 C -0.078 4.078 21 H 0.073 0.927 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.241 0.759 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.159 0.841 30 H 0.109 0.891 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.936 -16.886 0.974 17.025 hybrid contribution 0.875 1.807 0.350 2.038 sum 2.811 -15.079 1.324 15.396 Atomic orbital electron populations 1.69939 1.06112 1.27163 1.49882 1.24991 0.94910 0.99458 0.94814 0.86540 0.79501 0.82498 0.78816 1.20057 1.21181 1.20062 1.20959 0.93229 0.90154 1.52047 0.92175 1.19357 0.94205 0.90675 0.98265 1.21884 0.95965 0.79239 1.01300 1.45275 1.11005 1.03276 1.75675 1.18333 0.84503 0.81282 0.76992 1.90970 1.12291 1.86846 1.56672 1.86336 1.39851 1.13572 1.87307 1.24976 0.95884 0.82753 0.96064 0.87795 1.24016 1.01697 0.86139 0.99794 1.69120 1.25361 1.26021 0.93186 1.91697 1.94319 1.19108 1.17690 1.24009 1.03422 0.83441 0.96969 0.92656 0.95616 0.95618 0.92068 0.92087 0.75927 0.87492 0.86775 0.84063 0.89106 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.78 5.61 -4.04 -0.02 2.76 16 11 N -0.69 -12.03 5.56 -65.28 -0.36 -12.39 16 12 C 0.64 10.91 8.75 54.06 0.47 11.38 16 13 O -0.58 -11.40 15.67 -19.28 -0.30 -11.70 16 14 O -0.36 -5.01 10.02 -40.31 -0.40 -5.41 16 15 C 0.06 0.72 3.37 -24.86 -0.08 0.64 16 16 H 0.10 1.22 7.30 -51.93 -0.38 0.84 16 17 C 0.01 0.12 7.58 -1.66 -0.01 0.11 16 18 N -0.47 -4.47 8.53 -8.21 -0.07 -4.54 16 19 O -0.22 -2.67 12.58 -14.35 -0.18 -2.85 16 20 C 0.00 0.01 7.71 37.90 0.29 0.30 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.41 6.21 8.58 -40.82 -0.35 5.86 16 27 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.34 2.41 9.09 -39.29 -0.36 2.05 16 30 H 0.09 1.08 8.06 -51.93 -0.42 0.67 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -30.90 275.26 -5.37 -36.27 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.01 Total: 2.97 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.09 Total: 2.45 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.30 Total: -41.76 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.89 Total: -19.96 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.90 -5.37 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921907819.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.180 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds