Wall clock time and date at job start Sun Mar 29 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21509 * 120.00133 * 0.02562 * 12 11 10 14 14 O 1.34636 * 119.99877 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00136 * 180.02562 * 14 12 11 16 16 H 1.09004 * 110.70513 * 31.88803 * 15 14 12 17 17 C 1.55127 * 110.79622 * 155.44033 * 15 14 12 18 18 N 1.48764 * 101.66075 * 153.59469 * 17 15 14 19 19 O 1.47048 * 105.56224 * 322.76245 * 18 17 15 20 20 C 1.43486 * 108.98650 * 25.03382 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 1.08998 * 110.98911 * 271.68201 * 17 15 14 28 28 H 1.09000 * 110.99445 * 35.50254 * 17 15 14 29 29 H 1.00902 * 110.99838 * 83.12633 * 18 17 15 30 30 H 1.08998 * 110.03808 * 239.22121 * 20 19 18 31 31 H 1.09004 * 110.03253 * 117.78809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4019 -6.0980 0.0023 14 8 1.5136 -7.2640 0.0018 15 6 2.3044 -8.4818 0.0031 16 1 3.2400 -8.3332 0.5424 17 6 1.4977 -9.6617 0.6058 18 7 2.1339 -10.8311 -0.0581 19 8 2.4366 -10.3906 -1.4280 20 6 2.5735 -8.9623 -1.4395 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 0.5429 -4.9308 0.0011 27 1 1.6252 -9.7098 1.6872 28 1 0.4428 -9.5889 0.3414 29 1 2.9742 -11.1091 0.4265 30 1 1.8455 -8.5228 -2.1213 31 1 3.5836 -8.6865 -1.7426 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921907819.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:55 Heat of formation + Delta-G solvation = -105.694362 kcal Electronic energy + Delta-G solvation = -15687.786553 eV Core-core repulsion = 12777.230516 eV Total energy + Delta-G solvation = -2910.556037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.80976 -39.86911 -37.77291 -36.59391 -34.91576 -33.27905 -31.78920 -30.65210 -26.94012 -25.22991 -23.84516 -22.80685 -22.15547 -20.04871 -18.71243 -18.63126 -18.03654 -17.30239 -16.70850 -16.53722 -16.00060 -15.64341 -15.46965 -15.15406 -14.46889 -14.27857 -13.92445 -13.43620 -13.28018 -13.11367 -12.93721 -12.55167 -12.29541 -12.04798 -11.83033 -11.64131 -11.41891 -11.39160 -10.61365 -10.47332 -10.24042 -8.24175 -6.34930 0.90971 1.44023 1.45503 1.53670 1.55573 1.77809 2.40755 2.96113 3.11326 3.11956 3.21815 3.56364 3.79487 4.18310 4.25936 4.38951 4.43940 4.51526 4.58738 4.79205 5.00720 5.22519 5.32885 5.43479 5.55237 5.76108 5.76472 6.12790 6.35236 6.78333 7.16493 7.34658 8.87528 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.084585 B = 0.004007 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.949668 B = 6986.735441 C = 7110.829876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.021 3.979 10 C 0.157 3.843 11 N -0.692 5.692 12 C 0.644 3.356 13 O -0.604 6.604 14 O -0.349 6.349 15 C 0.057 3.943 16 H 0.104 0.896 17 C 0.023 3.977 18 N -0.468 5.468 19 O -0.241 6.241 20 C 0.003 3.997 21 H 0.266 0.734 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.416 0.584 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.361 0.639 30 H 0.085 0.915 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -16.923 1.871 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.017 4.017 10 C 0.035 3.965 11 N -0.350 5.350 12 C 0.396 3.604 13 O -0.496 6.496 14 O -0.261 6.261 15 C -0.002 4.002 16 H 0.122 0.878 17 C -0.107 4.107 18 N -0.138 5.138 19 O -0.249 6.249 20 C -0.076 4.076 21 H 0.075 0.925 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.253 0.747 27 H 0.156 0.844 28 H 0.132 0.868 29 H 0.177 0.823 30 H 0.103 0.897 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.371 -17.413 1.511 17.639 hybrid contribution 0.715 1.833 0.200 1.978 sum 3.086 -15.580 1.711 15.975 Atomic orbital electron populations 1.70048 1.07588 1.28129 1.50821 1.25860 0.95755 1.03100 0.94377 0.85497 0.78273 0.78105 0.79169 1.19327 1.20813 1.19236 1.21412 0.93744 0.91617 1.51801 0.91874 1.19167 0.94303 0.91408 0.96792 1.21387 0.94809 0.79444 1.00859 1.44973 1.11407 1.02776 1.75891 1.18244 0.84028 0.81834 0.76262 1.90956 1.13506 1.87393 1.57712 1.86344 1.39694 1.13306 1.86790 1.25292 0.96379 0.82209 0.96365 0.87804 1.24121 1.01123 0.84133 1.01328 1.69075 1.26519 1.26088 0.92120 1.91681 1.94370 1.19054 1.19754 1.23933 1.03143 0.83497 0.97020 0.92518 0.97072 0.96940 0.92583 0.92429 0.74737 0.84355 0.86759 0.82300 0.89689 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.26 13.29 21.45 0.28 -52.97 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -29.45 9.11 25.60 0.23 -29.22 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.01 5.09 29.85 0.15 1.16 16 10 C 0.16 6.34 5.61 86.38 0.48 6.83 16 11 N -0.69 -23.45 5.56 -590.85 -3.29 -26.74 16 12 C 0.64 21.36 8.75 129.79 1.14 22.50 16 13 O -0.60 -23.29 15.67 19.81 0.31 -22.98 16 14 O -0.35 -9.25 10.02 -55.45 -0.56 -9.81 16 15 C 0.06 1.21 3.37 31.80 0.11 1.32 16 16 H 0.10 2.27 7.30 -2.38 -0.02 2.25 16 17 C 0.02 0.34 7.58 86.67 0.66 1.00 16 18 N -0.47 -7.90 8.53 -179.90 -1.53 -9.44 16 19 O -0.24 -5.59 12.58 -52.14 -0.66 -6.25 16 20 C 0.00 0.07 7.71 72.46 0.56 0.63 16 21 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 22 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.42 12.43 8.58 -92.71 -0.80 11.63 16 27 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.36 4.19 9.09 -89.69 -0.82 3.37 16 30 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -64.59 275.26 -0.07 -64.66 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.46 Total: 13.93 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 3.79 Total: 5.11 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -4.53 Total: -89.15 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.90 Total: -39.03 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -64.59 -0.07 -64.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921907819.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.031 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds