Wall clock time and date at job start Sun Mar 29 2020 22:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48495 * 109.46875 * 239.99990 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99817 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99656 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99876 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00144 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.27868 * 14 13 11 16 16 H 1.09000 * 110.30820 * 57.81382 * 15 14 13 17 17 C 1.54173 * 110.34507 * 179.97438 * 15 14 13 18 18 O 1.44304 * 104.93622 * 118.86918 * 17 15 14 19 19 C 1.44395 * 104.60813 * 23.63676 * 18 17 15 20 20 O 1.44290 * 110.34495 * 295.51661 * 15 14 13 21 21 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46948 * 60.00523 * 9 7 2 23 23 H 1.08994 * 109.47551 * 299.99811 * 9 7 2 24 24 H 0.97000 * 119.99601 * 359.97438 * 10 9 7 25 25 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 26 26 H 1.09009 * 109.47454 * 300.27637 * 14 13 11 27 27 H 1.08998 * 109.47492 * 60.27932 * 14 13 11 28 28 H 1.08998 * 110.34896 * 237.72742 * 17 15 14 29 29 H 1.08994 * 110.35046 * 0.02562 * 17 15 14 30 30 H 1.09002 * 110.40190 * 79.46134 * 19 18 17 31 31 H 1.09005 * 110.40177 * 201.75777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5587 -5.1055 0.0006 13 7 2.6299 -5.9076 0.0021 14 6 2.1417 -7.2889 0.0079 15 6 3.3317 -8.2505 0.0144 16 1 3.9668 -8.0606 0.8797 17 6 2.8401 -9.7117 0.0212 18 8 3.3611 -10.2852 -1.1962 19 6 4.5030 -9.4650 -1.5254 20 8 4.0901 -8.1183 -1.2060 21 1 -0.4851 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 3.5836 -5.7304 0.0031 26 1 1.5347 -7.4560 0.8978 27 1 1.5375 -7.4645 -0.8822 28 1 3.2352 -10.2405 0.8886 29 1 1.7506 -9.7451 0.0195 30 1 5.3637 -9.7518 -0.9213 31 1 4.7389 -9.5504 -2.5862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922229885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:59 Heat of formation + Delta-G solvation = -123.769942 kcal Electronic energy + Delta-G solvation = -15736.270154 eV Core-core repulsion = 12824.930302 eV Total energy + Delta-G solvation = -2911.339853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64945 -39.03956 -35.56297 -34.51147 -33.91404 -32.31098 -30.90579 -27.36418 -25.72341 -25.05828 -22.55995 -21.88327 -20.12160 -18.11749 -17.41747 -17.02501 -16.35834 -16.01843 -15.59257 -15.33966 -14.65614 -14.56835 -13.79617 -13.59129 -13.08480 -13.05617 -12.53375 -12.47544 -11.95866 -11.84492 -11.64335 -10.94929 -10.84450 -10.56504 -10.27469 -10.12329 -9.40236 -9.35081 -8.77040 -8.65043 -7.72243 -6.12147 -4.18707 3.15085 3.28192 3.32337 3.33882 3.41900 3.73564 3.98755 4.27202 4.33229 4.37738 4.59654 4.76339 5.03122 5.16852 5.18923 5.23734 5.25552 5.52995 5.68535 5.84569 6.52632 6.84681 7.14970 7.55100 7.58376 7.60939 7.94174 8.07782 8.79738 8.97683 9.36324 9.51321 10.98124 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.065724 B = 0.004271 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.921404 B = 6553.707750 C = 6848.879880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.603 6.603 13 N -0.754 5.754 14 C 0.146 3.854 15 C 0.035 3.965 16 H 0.092 0.908 17 C 0.025 3.975 18 O -0.382 6.382 19 C 0.199 3.801 20 O -0.371 6.371 21 H 0.266 0.734 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.387 0.613 25 H 0.394 0.606 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -17.570 0.700 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.412 5.412 14 C 0.020 3.980 15 C -0.023 4.023 16 H 0.110 0.890 17 C -0.052 4.052 18 O -0.302 6.302 19 C 0.085 3.915 20 O -0.291 6.291 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.219 0.781 25 H 0.228 0.772 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.949 -17.586 0.456 19.737 hybrid contribution 1.460 1.037 0.192 1.802 sum 10.409 -16.549 0.648 19.561 Atomic orbital electron populations 1.69970 1.06091 1.27357 1.48936 1.24943 0.94909 0.99375 0.94780 0.86467 0.79389 0.82336 0.78643 1.20099 1.21086 1.20109 1.21199 0.93244 0.90466 1.53149 0.91993 1.18981 0.87791 0.81054 0.97613 1.45703 1.10808 1.04374 1.77183 1.16124 0.85120 0.81077 0.78367 1.90868 1.14248 1.84272 1.58809 1.44992 1.09054 1.04649 1.82482 1.21210 0.93681 0.79937 1.03157 1.23931 0.93988 0.95651 0.88723 0.89033 1.24018 1.01820 0.91267 0.88088 1.89260 1.45593 1.53450 1.41921 1.24990 0.88827 0.75772 1.01892 1.89348 1.70958 1.27348 1.41470 0.92420 0.95731 0.95733 0.78132 0.77226 0.90265 0.90881 0.90211 0.87729 0.91881 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 10 N -0.73 -16.09 5.55 -66.41 -0.37 -16.46 16 11 C 0.69 14.80 8.57 -86.92 -0.74 14.06 16 12 O -0.60 -15.44 16.34 5.29 0.09 -15.35 16 13 N -0.75 -11.75 5.52 -65.22 -0.36 -12.11 16 14 C 0.15 1.89 5.19 -4.04 -0.02 1.87 16 15 C 0.04 0.34 3.61 -26.12 -0.09 0.24 16 16 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 17 C 0.03 0.21 7.56 37.77 0.29 0.49 16 18 O -0.38 -3.93 11.78 -59.42 -0.70 -4.63 16 19 C 0.20 1.71 8.52 101.05 0.86 2.58 16 20 O -0.37 -4.19 11.43 -59.42 -0.68 -4.87 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.39 7.31 8.34 -40.82 -0.34 6.97 16 25 H 0.39 5.14 8.49 -40.82 -0.35 4.80 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.80 7.71 -51.93 -0.40 0.40 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -34.65 273.96 -6.34 -40.99 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.00 Total: 5.10 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.16 Total: 12.89 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.01 Total: -54.30 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.29 Total: -24.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.65 -6.34 -40.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.785 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds